Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18m05
         (179 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0227 + 42144437-42144446,42145059-42145428,42145528-421456...    27   2.8  
12_02_0884 - 23986393-23987486,23988213-23988314,23988561-239886...    26   3.7  
01_06_0321 - 28461178-28461335,28461608-28461686,28462380-284624...    25   6.5  
07_03_1044 + 23508592-23508769,23508846-23508895                       25   8.6  
02_03_0204 - 16369800-16371758,16372260-16372331                       25   8.6  

>01_07_0227 +
           42144437-42144446,42145059-42145428,42145528-42145649,
           42145767-42145935,42146236-42146545,42146742-42146825,
           42147012-42147083,42147780-42147821,42147931-42148020,
           42148106-42148213,42148292-42148384,42148540-42148619,
           42148701-42148953,42151222-42151236
          Length = 605

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 65  RNVVDVIKCSVTSVAQWNKINDNFD 139
           R++ D ++C   + A WNKI  N D
Sbjct: 307 RSLKDYVRCVCGAYAHWNKIKLNVD 331


>12_02_0884 -
           23986393-23987486,23988213-23988314,23988561-23988642,
           23989231-23989368
          Length = 471

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +2

Query: 59  INRNVVDVIKCSVTSVAQWNKINDN 133
           +N N VD  +CSV SV     INDN
Sbjct: 295 VNMNAVD--RCSVRSVGSKEPINDN 317


>01_06_0321 -
           28461178-28461335,28461608-28461686,28462380-28462448,
           28463125-28463243,28463343-28463411,28463658-28463772,
           28464265-28464429
          Length = 257

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +2

Query: 5   KIPCPLCXVESLHFNVYXINRN 70
           KIPC L    SLH NV  + +N
Sbjct: 223 KIPCVLTAKSSLHANVLVMEQN 244


>07_03_1044 + 23508592-23508769,23508846-23508895
          Length = 75

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -3

Query: 165 NNTLAKEAASKLSFILFHCATL 100
           + TL  EAA+K S I  H ATL
Sbjct: 52  SGTLDSEAATKSSIICMHLATL 73


>02_03_0204 - 16369800-16371758,16372260-16372331
          Length = 676

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +2

Query: 68  NVVDVIKCSVTSVAQWNKINDNFDAASL 151
           N+   +     +  +W K+NDNF + S+
Sbjct: 58  NIAGFLARKQKTTTEWKKLNDNFTSGSV 85


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,519,290
Number of Sequences: 37544
Number of extensions: 57630
Number of successful extensions: 132
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 14,793,348
effective HSP length: 39
effective length of database: 13,329,132
effective search space used: 266582640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)