Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18m05
         (179 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125446-2|AAD12805.1|  379|Caenorhabditis elegans Hypothetical ...    26   3.1  
AF077537-14|AAC26283.1|  556|Caenorhabditis elegans Hypothetical...    26   4.1  
AF067945-1|AAC17679.1|  312|Caenorhabditis elegans Serpentine re...    26   4.1  
Z75550-15|CAA99931.2| 2003|Caenorhabditis elegans Hypothetical p...    25   7.1  
Z75538-4|CAA99841.2| 2003|Caenorhabditis elegans Hypothetical pr...    25   7.1  
U49263-1|AAC47238.1| 2003|Caenorhabditis elegans non-muscle myos...    25   7.1  
U55372-3|ABF71724.1|  142|Caenorhabditis elegans Hypothetical pr...    25   9.4  
AC024810-16|AAO21412.2|  684|Caenorhabditis elegans Cdt (s. pomb...    25   9.4  
AC024810-15|AAF60769.1|  741|Caenorhabditis elegans Cdt (s. pomb...    25   9.4  

>AF125446-2|AAD12805.1|  379|Caenorhabditis elegans Hypothetical
           protein R05C11.2 protein.
          Length = 379

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = +2

Query: 80  VIKCSVTSVAQWNKINDNFDAASLASVLFEKSL 178
           VIKC V ++  + K++   D+ SL +V++ + +
Sbjct: 256 VIKCDVENLVHFRKVDIILDSLSLKNVIYLRDM 288


>AF077537-14|AAC26283.1|  556|Caenorhabditis elegans Hypothetical
           protein F16G10.15 protein.
          Length = 556

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +2

Query: 80  VIKCSVTSVAQWNKINDNFDAASLASVLFEK 172
           V+KC V  +  + K++   D+ SL  V++ K
Sbjct: 444 VVKCDVVDLVHFTKVDIVLDSISLGDVVYLK 474


>AF067945-1|AAC17679.1|  312|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 31 protein.
          Length = 312

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 71  VVDVIKCSVTSVAQWNKINDNFDAASL 151
           V  VI C V S+A  NKI+ + D + L
Sbjct: 224 VTFVINCGVFSIAMLNKISADIDPSKL 250


>Z75550-15|CAA99931.2| 2003|Caenorhabditis elegans Hypothetical
           protein F20G4.3 protein.
          Length = 2003

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = +2

Query: 47  NVYXINRNVVDVIKCSVTS--VAQWNKIND 130
           N+  +N NV+DV+K S  S  V  W  I D
Sbjct: 604 NMDPLNENVIDVLKTSKESLIVDMWKDIAD 633


>Z75538-4|CAA99841.2| 2003|Caenorhabditis elegans Hypothetical
           protein F20G4.3 protein.
          Length = 2003

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = +2

Query: 47  NVYXINRNVVDVIKCSVTS--VAQWNKIND 130
           N+  +N NV+DV+K S  S  V  W  I D
Sbjct: 604 NMDPLNENVIDVLKTSKESLIVDMWKDIAD 633


>U49263-1|AAC47238.1| 2003|Caenorhabditis elegans non-muscle myosin
           heavy chain II protein.
          Length = 2003

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = +2

Query: 47  NVYXINRNVVDVIKCSVTS--VAQWNKIND 130
           N+  +N NV+DV+K S  S  V  W  I D
Sbjct: 604 NMDPLNENVIDVLKTSKESLIVDMWKDIAD 633


>U55372-3|ABF71724.1|  142|Caenorhabditis elegans Hypothetical
           protein C02G6.3 protein.
          Length = 142

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 105 SHNGIK*TIILMPPLWPACCLKKVC 179
           +HNG   T+ +  PL   CC K  C
Sbjct: 27  NHNGDDLTVTISCPLASGCCEKGCC 51


>AC024810-16|AAO21412.2|  684|Caenorhabditis elegans Cdt (s. pombe
           licensing factor)homolog protein 1, isoform b protein.
          Length = 684

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 179 TDFFQTTRWPKRRHQNYRLFYSIVR 105
           TDFF+TTR P+ R +   +  SI +
Sbjct: 18  TDFFKTTRKPRARGEKKIIDESITK 42


>AC024810-15|AAF60769.1|  741|Caenorhabditis elegans Cdt (s. pombe
           licensing factor)homolog protein 1, isoform a protein.
          Length = 741

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 179 TDFFQTTRWPKRRHQNYRLFYSIVR 105
           TDFF+TTR P+ R +   +  SI +
Sbjct: 18  TDFFKTTRKPRARGEKKIIDESITK 42


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,973,518
Number of Sequences: 27780
Number of extensions: 54253
Number of successful extensions: 132
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 12,740,198
effective HSP length: 40
effective length of database: 11,628,998
effective search space used: 220950962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)