Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18m01
         (237 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces pombe...    26   0.76 
SPAC105.02c |||ankyrin repeat protein, unknown biological role|S...    25   1.3  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    25   1.3  
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca...    24   3.1  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    23   4.1  
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb...    22   9.4  
SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase |Schizosacch...    22   9.4  
SPCC622.05 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         22   9.4  

>SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 25.8 bits (54), Expect = 0.76
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 5/38 (13%)
 Frame = -1

Query: 198 IKKCSCIIFHCYYKSKISE-----AIKMLLQQCHVANV 100
           IKKC+ + F C +K   S+      IK + ++CH+ NV
Sbjct: 176 IKKCAEVNFLCIHKKLRSKRLTPLLIKEVTRRCHLENV 213


>SPAC105.02c |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 170

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +1

Query: 112 VTLLKQHFDSFGNFTFVITVKYNARTFFDIVLDIQKLNVKKK 237
           V+ +    DS GN    +  KY +    D +LDI  +N+  +
Sbjct: 36  VSFINNARDSLGNDCVHVCTKYGSLECLDWLLDISGVNLNNR 77


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
           subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -1

Query: 201 YIKKCSCIIFHCYYKSKISEAIK 133
           ++ +C C IF C Y   IS   K
Sbjct: 205 FVPECLCFIFECAYDYYISSEAK 227


>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
           catalytic subunit Arm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 811

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
 Frame = +1

Query: 91  ENIDVCY--VTLLKQHFDSFGNFTFVITVKYNARTF 192
           + +D  Y  V LLK HF  F +FT    V Y  R F
Sbjct: 332 QKVDKLYAEVLLLKIHFLLFESFTAESVVDYVRRCF 367


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -2

Query: 164 ITKVKFPKLSKCCFSN 117
           I+ V F K+S CCF++
Sbjct: 444 ISDVLFSKISSCCFAH 459


>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1136

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -3

Query: 196 QKMFLHYISLLLQK*NFRSYQNVASAMSRSKRQCFRPINALNLK 65
           Q +F H  S+   +    S+QN +S +S++K   F  +    LK
Sbjct: 424 QHIFAHNTSIESIQVALLSFQNSSSQVSKNKLDKFGALTISELK 467


>SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 91  ENIDVCYVTLLKQHFDSFGNF 153
           E I   Y+  + + F+SFGNF
Sbjct: 236 EFISFQYIRKMSEIFNSFGNF 256


>SPCC622.05 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 115

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 220 VFVYLTLYQKMFLHYIS 170
           VF  L  Y  ++LHY+S
Sbjct: 68  VFCILYAYPSVYLHYVS 84


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 792,369
Number of Sequences: 5004
Number of extensions: 11925
Number of successful extensions: 28
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 2,362,478
effective HSP length: 58
effective length of database: 2,072,246
effective search space used: 41444920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)