Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18m01
         (237 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0864 - 32546696-32546803,32546881-32546961,32547134-325472...    29   0.70 
03_01_0052 - 450258-450285,450345-450457,450540-450746,451021-45...    28   0.92 
07_03_0879 - 22256033-22256173,22256417-22256492,22256830-222572...    26   4.9  
11_06_0551 + 24903208-24903399,24903513-24904661,24904686-24907502     25   6.5  
11_06_0541 + 24771145-24775479                                         25   6.5  
08_01_0764 - 7332969-7333870,7334044-7334369,7334712-7335384,733...    25   8.6  
08_01_0628 - 5460030-5462960                                           25   8.6  
05_03_0659 - 16715437-16715520,16715607-16715714,16715788-167158...    25   8.6  

>01_06_0864 - 32546696-32546803,32546881-32546961,32547134-32547250,
            32548264-32548338,32548618-32548680,32549122-32549187,
            32549254-32549325,32549403-32549504,32549588-32549765,
            32549871-32549926,32551578-32551688,32551797-32551865,
            32551960-32552068,32552176-32552327,32552398-32552475,
            32554257-32554379,32555527-32555646,32555729-32555809,
            32555881-32556027,32556112-32556190,32557223-32557297,
            32558004-32558113,32558984-32559082,32559700-32559815,
            32559914-32560022,32560098-32560229,32560389-32560591,
            32561428-32561585,32561668-32561797,32562529-32562607,
            32562806-32562829
          Length = 1073

 Score = 28.7 bits (61), Expect = 0.70
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +1

Query: 88   DENIDVCYVTLLKQHFDSFGN-FTFVITVKYNARTFFDIVLDIQK 219
            D  + VC+  + KQH D +G  F F+I    +  T  DI + IQK
Sbjct: 959  DRLVHVCHFIIEKQHIDYYGEPFFFLIR---DGETLSDIKVRIQK 1000


>03_01_0052 -
           450258-450285,450345-450457,450540-450746,451021-451080,
           451281-451376,451495-451551,451786-451845,452774-452853,
           454265-454367,454530-454571
          Length = 281

 Score = 28.3 bits (60), Expect = 0.92
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -3

Query: 133 NVASAMSRSKRQCFRPINALNLKVKRVIN*MSETSVTL 20
           N    + +SKR CF  + A+ L    ++  +S+ S+TL
Sbjct: 88  NEGHQLLQSKRACFPKLEAIKLATADILTGLSKNSITL 125


>07_03_0879 -
           22256033-22256173,22256417-22256492,22256830-22257212,
           22257924-22257983,22258073-22258303,22258475-22258562,
           22259265-22259365,22259586-22259727,22259824-22259939
          Length = 445

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 9/29 (31%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -1

Query: 231 FYVKFLYI*HYIK-KCSCIIFHCYYKSKI 148
           F  + +++ H +  KC C+ FHC  K+++
Sbjct: 107 FNEQLIFMKHALSSKCECLTFHCEEKARM 135


>11_06_0551 + 24903208-24903399,24903513-24904661,24904686-24907502
          Length = 1385

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 29  TRFAHSINNSFYFQV*RVDWTKTLTFAT*H 118
           T+  H INN +  +V  +  TK   FAT H
Sbjct: 837 TKLPHQINNLYDLEVLDIRQTKVPAFATKH 866


>11_06_0541 + 24771145-24775479
          Length = 1444

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 29  TRFAHSINNSFYFQV*RVDWTKTLTFAT*H 118
           T+  H INN +  +V  +  TK   FAT H
Sbjct: 895 TKLPHQINNLYDLEVLDIRQTKVPAFATKH 924


>08_01_0764 -
           7332969-7333870,7334044-7334369,7334712-7335384,
           7336195-7336219
          Length = 641

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 201 YIKKCSCIIFHCYYKSK 151
           Y K+CSC I H Y ++K
Sbjct: 155 YCKRCSCCICHKYDENK 171


>08_01_0628 - 5460030-5462960
          Length = 976

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -3

Query: 145 RSYQNVASAMSRSKRQCFRPINALNL 68
           RS+Q   S +  S   CFR +  LNL
Sbjct: 598 RSFQAFGSKLDASLMSCFRLLTVLNL 623


>05_03_0659 -
           16715437-16715520,16715607-16715714,16715788-16715871,
           16715963-16716095,16717051-16717118,16717528-16717599,
           16717771-16717843,16718038-16718057
          Length = 213

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -2

Query: 221 SFCISNTISKNVLALYFTVITKVKFPKLSKCCFSNVT 111
           S+C S TI+  ++ L + +I  V       C FS VT
Sbjct: 114 SWCRSLTITFTIMLLVWHLIAVVTIEAADHCAFSLVT 150


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,261,023
Number of Sequences: 37544
Number of extensions: 53658
Number of successful extensions: 132
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 14,793,348
effective HSP length: 57
effective length of database: 12,653,340
effective search space used: 265720140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)