Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18m01
         (237 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021503-1|CAA16420.2|  309|Caenorhabditis elegans Hypothetical ...    26   4.1  
Z69662-7|CAA93497.2| 1132|Caenorhabditis elegans Hypothetical pr...    25   5.4  
Z92784-2|CAB07193.3| 2029|Caenorhabditis elegans Hypothetical pr...    25   7.2  
Z83219-6|CAB05696.5|  351|Caenorhabditis elegans Hypothetical pr...    25   9.5  

>AL021503-1|CAA16420.2|  309|Caenorhabditis elegans Hypothetical
           protein Y68A4A.2 protein.
          Length = 309

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -1

Query: 225 VKFLYI*HYIKKCSCIIFHCYYKSK 151
           +K+LYI    K CSC +F  + +++
Sbjct: 151 IKYLYIVIIAKDCSCFVFSVWKRNE 175


>Z69662-7|CAA93497.2| 1132|Caenorhabditis elegans Hypothetical
           protein F56D5.9 protein.
          Length = 1132

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = -2

Query: 236 FFFTLSFCISNTISKNVLALYFTVITKVKFPKLSK 132
           +F  + +C+SN I +  L+  F + +  K  +L K
Sbjct: 133 YFDDIEYCLSNDIDRTKLSFCFALFSDGKIEELFK 167


>Z92784-2|CAB07193.3| 2029|Caenorhabditis elegans Hypothetical protein
            F31C3.3 protein.
          Length = 2029

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = -1

Query: 198  IKKCSCIIFHCYYKSKI 148
            + +CSC I+ CY+  ++
Sbjct: 1527 VSRCSCQIYFCYFSDEL 1543


>Z83219-6|CAB05696.5|  351|Caenorhabditis elegans Hypothetical
           protein C31C9.4 protein.
          Length = 351

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +1

Query: 133 FDSFGNFTFVITVKYNARTFFDIVLDIQKLNVK 231
           F+   +F  + +++  AR   D  LD+QKL +K
Sbjct: 132 FEQTSSFYEIKSLRCIARVLSDPTLDLQKLTIK 164


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,305,813
Number of Sequences: 27780
Number of extensions: 64615
Number of successful extensions: 207
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 12,740,198
effective HSP length: 58
effective length of database: 11,128,958
effective search space used: 222579160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)