Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18m01
         (237 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    22   1.2  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   2.0  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    20   4.7  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    19   6.2  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    19   6.2  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    19   8.3  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    19   8.3  

>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.8 bits (44), Expect = 1.2
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +1

Query: 136 DSFGNFTFVITVKYN 180
           D +G+ TFVI +K+N
Sbjct: 68  DQWGDKTFVIIMKFN 82


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.0 bits (42), Expect = 2.0
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +1

Query: 127 QHFDSFGNFTFV 162
           +HF + GNF FV
Sbjct: 95  EHFTALGNFYFV 106


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 19.8 bits (39), Expect = 4.7
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = -3

Query: 232 FLR*VFVYLTLYQKMFLHYIS 170
           FL   F++ T+ Q   +HY +
Sbjct: 281 FLSFAFIFATIIQFAVVHYFT 301


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 19.4 bits (38), Expect = 6.2
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = -1

Query: 180 IIFHCYYKSKISEAIKMLLQQCHVANVNVFVQS 82
           I+F+    S I    KML +Q    NV   V +
Sbjct: 237 ILFYSRLLSSIRNHEKMLREQAKKMNVKSLVSN 269


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 19.4 bits (38), Expect = 6.2
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = -1

Query: 180 IIFHCYYKSKISEAIKMLLQQCHVANVNVFVQS 82
           I+F+    S I    KML +Q    NV   V +
Sbjct: 237 ILFYSRLLSSIRNHEKMLREQAKKMNVKSLVSN 269


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 19.0 bits (37), Expect = 8.3
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +1

Query: 136 DSFGNFTFVITVKYN 180
           D + N TF+  ++YN
Sbjct: 75  DQWHNKTFLAVIRYN 89


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 19.0 bits (37), Expect = 8.3
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 214 VYLTLYQKMFLHY 176
           VY+ LYQ+   HY
Sbjct: 235 VYIPLYQQPERHY 247


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,309
Number of Sequences: 438
Number of extensions: 727
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  3898467
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)