Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc18l04
(551 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC25H2.05 |egd2|nac1|nascent polypeptide-associated complex al... 69 5e-13
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 27 1.8
SPBC651.03c |gyp10||GTPase activating protein Gyp10|Schizosaccha... 26 4.2
SPAC212.01c |||S. pombe specific DUF999 family protein 2|Schizos... 25 7.4
SPBCPT2R1.04c |||S. pombe specific DUF999 protein family 10|Schi... 25 7.4
SPAC212.04c |||S. pombe specific DUF999 family protein 1|Schizos... 25 7.4
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 25 7.4
SPBCPT2R1.01c ||SPBPB2B2.20c|S. pombe specific DUF999 protein fa... 25 7.4
SPBC1348.01 |||S. pombe specific DUF999 protein family 5|Schizos... 25 7.4
SPBC36.12c |git7||SGT1-like protein Git7|Schizosaccharomyces pom... 25 9.8
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom... 25 9.8
>SPBC25H2.05 |egd2|nac1|nascent polypeptide-associated complex alpha
subunit Egd2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 173
Score = 68.9 bits (161), Expect = 5e-13
Identities = 31/62 (50%), Positives = 47/62 (75%)
Frame = +2
Query: 347 KKARKIMSKLGLKPVQGVERVTIRKSKNILFVINSPDVYKNPHSDTYIVFGEAKIEDLST 526
+KA+K++ KLGLK V+G+ RV +R+ KNIL +IN P VYK+ ++ YIV G+ +ED++
Sbjct: 25 EKAQKLIQKLGLKRVEGITRVAMRRPKNILLIINEPIVYKS-SNNAYIVLGKVTVEDMAA 83
Query: 527 QA 532
QA
Sbjct: 84 QA 85
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 27.1 bits (57), Expect = 1.8
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 134 QQYIKMPELTELDKATASMTEKRKEE 211
++YIK +LTELD +T+ RK +
Sbjct: 205 KEYIKKCQLTELDPTQQLLTQSRKNQ 230
>SPBC651.03c |gyp10||GTPase activating protein
Gyp10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 373
Score = 25.8 bits (54), Expect = 4.2
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -2
Query: 418 SDCHSLYSLYWFETEFTHYLSGLLLTTRLFRF 323
+D ++L W T F H +S + + RLF F
Sbjct: 184 ADIQCYFALSWLITWFAHDVSDISVVCRLFDF 215
>SPAC212.01c |||S. pombe specific DUF999 family protein
2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 25.0 bits (52), Expect = 7.4
Identities = 12/20 (60%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Frame = -1
Query: 74 NKINLFLNDLFT-F*RYRNT 18
NKI FLNDLFT F ++ N+
Sbjct: 73 NKIKEFLNDLFTEFSKFHNS 92
>SPBCPT2R1.04c |||S. pombe specific DUF999 protein family
10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 280
Score = 25.0 bits (52), Expect = 7.4
Identities = 12/20 (60%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Frame = -1
Query: 74 NKINLFLNDLFT-F*RYRNT 18
NKI FLNDLFT F ++ N+
Sbjct: 73 NKIKEFLNDLFTEFSKFHNS 92
>SPAC212.04c |||S. pombe specific DUF999 family protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 288
Score = 25.0 bits (52), Expect = 7.4
Identities = 12/20 (60%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Frame = -1
Query: 74 NKINLFLNDLFT-F*RYRNT 18
NKI FLNDLFT F ++ N+
Sbjct: 73 NKIKEFLNDLFTEFSKFHNS 92
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 25.0 bits (52), Expect = 7.4
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Frame = +2
Query: 368 SKLGLK--PVQG--VERVTIRKSKNILFVINSPDVYKNPHSDTYIVFGEAKIEDLST 526
+KL LK PV+G VER + +I + D+Y P DT +V ED S+
Sbjct: 976 TKLDLKFSPVEGIMVERTAVNNFVDIGVSVAPKDLYGYPLYDTEVVSLAFNKEDASS 1032
>SPBCPT2R1.01c ||SPBPB2B2.20c|S. pombe specific DUF999 protein
family 9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 25.0 bits (52), Expect = 7.4
Identities = 12/20 (60%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Frame = -1
Query: 74 NKINLFLNDLFT-F*RYRNT 18
NKI FLNDLFT F ++ N+
Sbjct: 73 NKIKEFLNDLFTEFSKFHNS 92
>SPBC1348.01 |||S. pombe specific DUF999 protein family
5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 25.0 bits (52), Expect = 7.4
Identities = 12/20 (60%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Frame = -1
Query: 74 NKINLFLNDLFT-F*RYRNT 18
NKI FLNDLFT F ++ N+
Sbjct: 73 NKIKEFLNDLFTEFSKFHNS 92
>SPBC36.12c |git7||SGT1-like protein Git7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 24.6 bits (51), Expect = 9.8
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Frame = +2
Query: 137 QYIKMPELT----ELDKATASMTEKRKEETAXXXXXXXXNIPELEDA 265
+++K +LT +LD + E++ ++T+ NIPELE A
Sbjct: 107 KHLKKEDLTKWQVQLDSMLTIVHEQQNQDTSSLIPDECPNIPELEAA 153
>SPBC3F6.05 |rga1||GTPase activating protein
Rga1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1150
Score = 24.6 bits (51), Expect = 9.8
Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
Frame = +1
Query: 253 IGRCRCTRCRWNHKPDC----WN*HRQQIE 330
IG CT+C++N++ + WN +QIE
Sbjct: 506 IGCLSCTKCKYNNRENYDWARWNNQTKQIE 535
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,960,454
Number of Sequences: 5004
Number of extensions: 34558
Number of successful extensions: 105
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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