Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18l04
         (551 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0148 + 1174097-1174289,1174539-1174672,1174760-1175098          110   6e-25
01_07_0123 + 41206782-41206844,41207701-41207782,41208587-412087...   100   9e-22
02_05_1298 - 35542250-35542831,35543218-35543410,35543511-355438...    28   5.7  
11_05_0071 - 18821475-18821609,18821691-18822065,18822142-188226...    27   7.5  
10_08_0171 + 15404117-15405598                                         27   7.5  
05_05_0237 - 23526613-23527178,23527979-23528066,23528384-235285...    27   10.0 

>03_01_0148 + 1174097-1174289,1174539-1174672,1174760-1175098
          Length = 221

 Score =  110 bits (265), Expect = 6e-25
 Identities = 49/75 (65%), Positives = 64/75 (85%)
 Frame = +2

Query: 326 SKQSRGEKKARKIMSKLGLKPVQGVERVTIRKSKNILFVINSPDVYKNPHSDTYIVFGEA 505
           SKQSR EKK+RK M KLG+KPV GV R+TI+++KNILFV++ PDV+K+P S+TY++FGEA
Sbjct: 75  SKQSRSEKKSRKAMMKLGMKPVTGVSRITIKRAKNILFVVSKPDVFKSPTSETYVIFGEA 134

Query: 506 KIEDLSTQATMAAAE 550
           KIEDLS+Q    AA+
Sbjct: 135 KIEDLSSQLQAQAAQ 149


>01_07_0123 +
           41206782-41206844,41207701-41207782,41208587-41208717,
           41208758-41209147
          Length = 221

 Score =  100 bits (239), Expect = 9e-22
 Identities = 56/102 (54%), Positives = 68/102 (66%), Gaps = 19/102 (18%)
 Frame = +2

Query: 302 AGIDIVSKSKQSRGEKKARKIMSKLGLKPVQGVERVTIRKSKN----------------- 430
           AG D   +SKQSR EKK+RK M KLG+K + GV RVTI+KSKN                 
Sbjct: 50  AGGDASGRSKQSRSEKKSRKAMQKLGMKTITGVSRVTIKKSKNAHRIVIYHCILLNFSLH 109

Query: 431 --ILFVINSPDVYKNPHSDTYIVFGEAKIEDLSTQATMAAAE 550
             ILFVI+ PDV+K+P+SDTY++FGEAKIEDLS+Q    AAE
Sbjct: 110 YQILFVISKPDVFKSPNSDTYVIFGEAKIEDLSSQLQTQAAE 151


>02_05_1298 -
           35542250-35542831,35543218-35543410,35543511-35543827,
           35544144-35544186,35545845-35545900,35546028-35546102,
           35546249-35546345,35546422-35546546,35547063-35547167,
           35547295-35547432,35547758-35547831,35547995-35548065,
           35548168-35548363,35548482-35548572,35549264-35549342,
           35549431-35549491,35549745-35549814,35549913-35549987,
           35550119-35550194,35550403-35550489,35550744-35550880,
           35551000-35551063,35551351-35551415
          Length = 958

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -1

Query: 233 SHCQMMQSLLCASRS*RRWPCQVQSVLAS 147
           S C  +QSL+ ++   +RWP  V S LAS
Sbjct: 422 SLCSSLQSLILSNNKIKRWPGTVFSSLAS 450


>11_05_0071 -
           18821475-18821609,18821691-18822065,18822142-18822674,
           18822776-18823331,18824593-18824621,18824970-18825018
          Length = 558

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = +2

Query: 335 SRGEKKAR-KIMSKLGLKPVQGVERVTIRKSKNILFVINSPDVYKNPHSDTYIVFG 499
           + G +KAR KI   L L  +    R+ + + KNI+   +  +  +   SD Y +FG
Sbjct: 141 NNGAEKARSKIFGPLVLLQLWSWSRLPLGRPKNIIQKTDEVEEQEEEESDGYPIFG 196


>10_08_0171 + 15404117-15405598
          Length = 493

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +2

Query: 272 PDAGGITNPIAGIDIVSKSKQSRGEKKARKIMSKLGLKPVQGVERVTI 415
           PD  G    ++ I  V++  Q    KKARK+M + G+K V G   + +
Sbjct: 401 PDHDGRYIGLSNIYAVARRWQEA--KKARKVMEERGVKKVPGFSEIDV 446


>05_05_0237 -
           23526613-23527178,23527979-23528066,23528384-23528527,
           23528674-23528790,23528860-23528970,23530911-23531062,
           23531362-23531450,23531664-23531761
          Length = 454

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 16/44 (36%), Positives = 26/44 (59%)
 Frame = +2

Query: 350 KARKIMSKLGLKPVQGVERVTIRKSKNILFVINSPDVYKNPHSD 481
           KA++I+ +L LKPV   +    R+    L ++NSP   ++PH D
Sbjct: 225 KAQEILEEL-LKPVDESQDYYKRQQLRELALLNSPLREESPHPD 267


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,366,956
Number of Sequences: 37544
Number of extensions: 212816
Number of successful extensions: 522
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)