Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18l04
         (551 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024847-3|AAF60854.1|  195|Caenorhabditis elegans Hypothetical ...   117   5e-27
AC024847-2|AAO21415.1|  197|Caenorhabditis elegans Hypothetical ...   117   5e-27
U29488-6|AAA68776.1|  161|Caenorhabditis elegans Inhibitor of ce...    33   0.18 
Z71186-4|CAA94916.1|  867|Caenorhabditis elegans Hypothetical pr...    27   6.8  
AF047652-6|AAC04390.3|  397|Caenorhabditis elegans Hypothetical ...    27   9.0  

>AC024847-3|AAF60854.1|  195|Caenorhabditis elegans Hypothetical
           protein Y65B4BR.5a protein.
          Length = 195

 Score =  117 bits (282), Expect = 5e-27
 Identities = 58/82 (70%), Positives = 66/82 (80%)
 Frame = +2

Query: 305 GIDIVSKSKQSRGEKKARKIMSKLGLKPVQGVERVTIRKSKNILFVINSPDVYKNPHSDT 484
           G  I  ++KQSR EKKARK+ SKLGLK V GV RV IRKSKNILFVIN PDV+K+P SDT
Sbjct: 46  GDHIDKQAKQSRSEKKARKLFSKLGLKQVTGVSRVCIRKSKNILFVINKPDVFKSPGSDT 105

Query: 485 YIVFGEAKIEDLSTQATMAAAE 550
           YI+FGEAKIEDL+  A M+A E
Sbjct: 106 YIIFGEAKIEDLTQHAQMSAIE 127


>AC024847-2|AAO21415.1|  197|Caenorhabditis elegans Hypothetical
           protein Y65B4BR.5b protein.
          Length = 197

 Score =  117 bits (282), Expect = 5e-27
 Identities = 58/82 (70%), Positives = 66/82 (80%)
 Frame = +2

Query: 305 GIDIVSKSKQSRGEKKARKIMSKLGLKPVQGVERVTIRKSKNILFVINSPDVYKNPHSDT 484
           G  I  ++KQSR EKKARK+ SKLGLK V GV RV IRKSKNILFVIN PDV+K+P SDT
Sbjct: 46  GDHIDKQAKQSRSEKKARKLFSKLGLKQVTGVSRVCIRKSKNILFVINKPDVFKSPGSDT 105

Query: 485 YIVFGEAKIEDLSTQATMAAAE 550
           YI+FGEAKIEDL+  A M+A E
Sbjct: 106 YIIFGEAKIEDLTQHAQMSAIE 127


>U29488-6|AAA68776.1|  161|Caenorhabditis elegans Inhibitor of cell
           death protein 1 protein.
          Length = 161

 Score = 32.7 bits (71), Expect = 0.18
 Identities = 19/75 (25%), Positives = 36/75 (48%)
 Frame = +2

Query: 281 GGITNPIAGIDIVSKSKQSRGEKKARKIMSKLGLKPVQGVERVTIRKSKNILFVINSPDV 460
           GG   P     ++ K+  +  +KK +  + KL +  + G+E V + K    +   N+P V
Sbjct: 23  GGKGTPRRKKKVIHKTAAA-DDKKLQSNLKKLSVTNIPGIEEVNMIKDDGTVIHFNNPKV 81

Query: 461 YKNPHSDTYIVFGEA 505
             +  ++T+ V G A
Sbjct: 82  QTSVPANTFSVTGSA 96


>Z71186-4|CAA94916.1|  867|Caenorhabditis elegans Hypothetical
           protein F23D12.5 protein.
          Length = 867

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = +2

Query: 362 IMSKLGLKPVQGVERVTIRKSKNILFVINSPDVYKNPHSDTYIVFGEAK 508
           I S    K +  VER +I+K + +LF + + D  +NP     IV G+ K
Sbjct: 796 IRSAKNEKSIIPVERCSIQKCREVLFNMITLDNKQNPFCLNCIVKGKVK 844


>AF047652-6|AAC04390.3|  397|Caenorhabditis elegans Hypothetical
           protein C34H4.1 protein.
          Length = 397

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = +2

Query: 431 ILFVINSPDVYKNPHSDTYIVFGEAKIEDLST 526
           ILFV +SPD+ K+P+   Y+V  + +  D ST
Sbjct: 110 ILFV-SSPDMAKDPNFLVYVVADQVRTVDRST 140


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,817,894
Number of Sequences: 27780
Number of extensions: 197745
Number of successful extensions: 560
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)