Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18l04
         (551 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    25   0.51 
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   8.3  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   8.3  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   8.3  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    21   8.3  

>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 25.0 bits (52), Expect = 0.51
 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = +2

Query: 311 DIVSKSKQSRGEKKARKIMSKLGLKPVQGVERVTIRKSKNI--LFVINSPDVYK 466
           D++   +Q+R +   R+ M KL     +    V+  + KN+  L +I  PD+ K
Sbjct: 421 DVILVGEQARAQDGLRRRMDKLKSSIEEANLAVSAEREKNVSLLHLIFPPDIAK 474


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 543 AAMVACVDKSSILASP 496
           AA+ A V  SSI++SP
Sbjct: 379 AAVAAAVQSSSIVSSP 394


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 7/30 (23%), Positives = 15/30 (50%)
 Frame = -2

Query: 274 WCTCIFQFWNVVIRVTVR*CSLFFALLGHR 185
           + TC+   W  +  + +   +LF+ L+  R
Sbjct: 102 YATCVLSCWTNIYYIIILAWALFYLLVSLR 131


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 7/30 (23%), Positives = 15/30 (50%)
 Frame = -2

Query: 274 WCTCIFQFWNVVIRVTVR*CSLFFALLGHR 185
           + TC+   W  +  + +   +LF+ L+  R
Sbjct: 155 YATCVLSCWTNIYYIIILAWALFYLLVSLR 184


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
 Frame = +2

Query: 341 GEKKARKIMSKLGL----KPVQGVERVTI 415
           GEKK RK+++K  L    +P   VE   I
Sbjct: 98  GEKKFRKVITKAPLECMCRPCTSVEEYAI 126


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,677
Number of Sequences: 438
Number of extensions: 2145
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15827139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)