Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc18l02
(247 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ... 25 1.1
SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|c... 25 1.1
SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex ... 25 1.8
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos... 24 3.2
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces... 24 3.2
SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces pombe... 24 3.2
SPBC4C3.09 |||acetylglucosaminyltransferase|Schizosaccharomyces ... 23 5.6
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch... 23 5.6
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang... 23 5.6
SPAC4H3.13 |||transcription factor Pcc1 |Schizosaccharomyces pom... 22 9.8
SPCC18B5.11c |cds1||replication checkpoint kinase Cds1|Schizosac... 22 9.8
>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 25.4 bits (53), Expect = 1.1
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +2
Query: 122 LWFYPDRDLKPCICSPLLFLDDLLIVYEDEENI 220
LW YP PCI L L+ I+Y D+E +
Sbjct: 517 LWRYPP--FHPCIVLLLDLLNSQKIIYLDDERV 547
>SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 519
Score = 25.4 bits (53), Expect = 1.1
Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Frame = +3
Query: 15 CCLLCLRTKWMCFDFSSIY-FTFINNVSY 98
C L+C+ W CF Y + F+ N+ +
Sbjct: 309 CVLICVAAGWACFGIWMYYLWQFLENLRF 337
>SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex
subunit |Schizosaccharomyces pombe|chr 2|||Manual
Length = 509
Score = 24.6 bits (51), Expect = 1.8
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = -3
Query: 224 ILYFLHLHTQLVNHLKIAKESIYTVLNLGQGK 129
+L +HLHT+L++ I + + L+L + K
Sbjct: 113 VLESVHLHTKLIDGRPITNFASFNFLDLAENK 144
>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 532
Score = 23.8 bits (49), Expect = 3.2
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Frame = -3
Query: 224 ILYFLHLHTQLVNHLKIAKESIYTVLNLGQGKTTIHTMFLVVV*NVIDK---SKINRRKI 54
IL LH H ++ ++ + YTVL L T +H+M VV N +D+ KI R+ +
Sbjct: 74 ILRQLH-HPNIITLYQVFRVPKYTVLALEYMDTDLHSM--VVKHNRLDECTTRKIFRQIV 130
Query: 53 KTHPFC 36
+C
Sbjct: 131 HAIDYC 136
>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1155
Score = 23.8 bits (49), Expect = 3.2
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +2
Query: 131 YPDRDLKPCICSPLLFLDDLLIVYEDE 211
YP R L S + L+D LI+Y ++
Sbjct: 799 YPKRILSANCSSKFIVLEDCLIIYSND 825
>SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 590
Score = 23.8 bits (49), Expect = 3.2
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +2
Query: 131 YPDRDLKPCICSPLLFLDDLL 193
YPD DLK + S LL L LL
Sbjct: 398 YPDEDLKVDLISKLLSLVQLL 418
>SPBC4C3.09 |||acetylglucosaminyltransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 376
Score = 23.0 bits (47), Expect = 5.6
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -3
Query: 212 LHLHTQLVNHLKIAKESIYTVLNLG 138
L LHT+L+ K S+ +LNLG
Sbjct: 7 LRLHTRLLLRSKFVLISLILLLNLG 31
>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 23.0 bits (47), Expect = 5.6
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 163 AYTRF*ISVRVKPQFTQCF*S*YETL 86
A T + I ++VK T CF + YE L
Sbjct: 1257 AQTVYQIDIQVKELLTNCFYNVYENL 1282
>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 23.0 bits (47), Expect = 5.6
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 164 SPLLFLDDLLIVYEDEENIE*YRYLKKK 247
+P + LDD L++ E E+N E Y + +K
Sbjct: 504 TPFVNLDDELLLIEKEKN-EKYNFTSRK 530
>SPAC4H3.13 |||transcription factor Pcc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 88
Score = 22.2 bits (45), Expect = 9.8
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 134 PDRDLKPCICSPLLFLDDLLIV 199
PDR+LK + LF+DD +V
Sbjct: 32 PDRELKEELVQRNLFVDDNYLV 53
>SPCC18B5.11c |cds1||replication checkpoint kinase
Cds1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 22.2 bits (45), Expect = 9.8
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -3
Query: 212 LHLHTQLVNHLKIAKESI 159
LHLH Q V H I E+I
Sbjct: 283 LHLHKQGVTHRDIKPENI 300
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 790,278
Number of Sequences: 5004
Number of extensions: 12508
Number of successful extensions: 31
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 43306998
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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