Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18l02
         (247 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0479 - 3695245-3696588,3696705-3696965                           27   2.1  
04_04_0331 + 24472853-24473212,24474112-24474253,24474948-24475123     27   2.1  
02_02_0399 - 9825365-9825912,9826019-9826190,9826325-9826442,982...    26   4.9  
09_03_0003 + 11396076-11396386,11398803-11398869,11399194-113996...    25   6.4  
08_01_0579 - 5141356-5141439,5141656-5141718,5142297-5142424,514...    25   6.4  
08_02_1453 - 27199228-27200579,27200712-27202646,27202905-272029...    25   8.5  

>11_01_0479 - 3695245-3696588,3696705-3696965
          Length = 534

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = +3

Query: 3   EHFACCLLCLRTKW-MCFDFSSIYFTFINNVSYYD*KHCVNCG 128
           EH+  C  C RT W + FD  S     + ++ YYD   C   G
Sbjct: 362 EHWESCFHCERTIWKIIFDMKS---KKLLSIRYYDESQCQTWG 401


>04_04_0331 + 24472853-24473212,24474112-24474253,24474948-24475123
          Length = 225

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 158 ICSPLLFLDDLLIVYEDEENIE 223
           ICS  L   D+ ++Y D++N+E
Sbjct: 121 ICSSFLMRTDIFVLYTDDKNLE 142


>02_02_0399 -
           9825365-9825912,9826019-9826190,9826325-9826442,
           9826612-9826878,9826992-9827062,9827163-9827791,
           9827898-9828053,9828150-9828210
          Length = 673

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -3

Query: 221 LYFLHLHTQLVNHLKIAKESIYTVLNLGQGKTTIHTM 111
           LY L+L + +V  LK +     T++N+G  + T H M
Sbjct: 562 LYQLNLPSIVVPDLKYSVTVWRTIINIGVAEATYHAM 598


>09_03_0003 +
           11396076-11396386,11398803-11398869,11399194-11399698,
           11400903-11401038,11401186-11401257,11401891-11401923,
           11401924-11402047,11402387-11402437,11403437-11403563,
           11404230-11404298,11404369-11404486,11404755-11405151
          Length = 669

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = -3

Query: 227 IILYFLHLHTQLVNHLKIAKESIYTVLNLGQGKTTIHTMFLV 102
           +++  + + T L  H+K   +  YT L   +  TT+H  +LV
Sbjct: 405 VLIVAILVSTLLPPHIKKTMKITYTYLMAVESLTTVHHRYLV 446


>08_01_0579 -
           5141356-5141439,5141656-5141718,5142297-5142424,
           5142554-5142794,5142872-5142999,5143105-5143135
          Length = 224

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +2

Query: 140 RDLKPCICSPLLFLDDLLIVY 202
           RDL PC+  PLLF D+ +I++
Sbjct: 176 RDLVPCV--PLLFKDEQIILW 194


>08_02_1453 - 27199228-27200579,27200712-27202646,27202905-27202966,
            27203525-27203545,27204305-27204344,27204345-27204792,
            27204866-27204964,27205071-27205394,27205446-27205574,
            27205657-27205875,27205976-27206194,27206436-27206669,
            27206773-27206943,27207466-27207577,27207955-27208010,
            27208083-27208181,27208901-27209134,27209258-27209311,
            27209363-27209422
          Length = 1955

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -3

Query: 191  VNHLKIAKESIYTVLNLGQGKTTIHTM 111
            V HL+I +E   T+  L +G +++HT+
Sbjct: 1401 VRHLRIPEEMEETMTELFKGTSSLHTL 1427


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,666,349
Number of Sequences: 37544
Number of extensions: 66414
Number of successful extensions: 164
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 14,793,348
effective HSP length: 60
effective length of database: 12,540,708
effective search space used: 263354868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)