Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18l01
         (691 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces p...    32   0.090
SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual    29   0.84 
SPAC4H3.01 |||DNAJ domain protein Caj1/Djp1 type|Schizosaccharom...    28   1.1  
SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy...    28   1.1  
SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo...    27   3.4  
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc...    26   4.5  
SPBC800.10c |||EPS15 repeat family actin cortical patch componen...    25   7.8  

>SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 31.9 bits (69), Expect = 0.090
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
 Frame = +2

Query: 365 DYHKVTPEELYQRFQTHPE--NGLSHAKAKENLERDGPNALTPPKQTPEWVKFCKNLFGG 538
           D ++  PE   ++FQ   E    LS  K +E  ++ G     P     +  +F KNLFGG
Sbjct: 39  DKNRENPEAAREKFQKLAEAYQVLSDPKLREKYDKLGKVGAVPDAGFEDAFEFFKNLFGG 98

Query: 539 FALLLWIGAI 568
            +   ++G +
Sbjct: 99  DSFRDYVGEL 108


>SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 613

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 24/58 (41%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
 Frame = -3

Query: 290 RPFS*VSMYRRIKG-TSRLSVSSVSLNGAGWDCSSSATTGPLR----LPRPNGKLKMC 132
           R  S VS+Y RI   T R   +S+    AG  C       PLR    LP  NGKLK+C
Sbjct: 308 RSGSVVSLYNRINSQTVRTKYTSIE---AGQFCLRGDRWVPLRINLLLPDENGKLKVC 362


>SPAC4H3.01 |||DNAJ domain protein Caj1/Djp1
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 392

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 6/85 (7%)
 Frame = +2

Query: 332 DLEDLKQELDIDYHKVT----PEELYQRFQTHPE--NGLSHAKAKENLERDGPNALTPPK 493
           D++   ++L + YH       P+   ++FQ   E    L   K +   ++ G     P +
Sbjct: 23  DIKKAYRKLAVKYHPDKNPDDPQGASEKFQKISEAYQVLGDEKLRSQYDQFGKEKAVPEQ 82

Query: 494 QTPEWVKFCKNLFGGFALLLWIGAI 568
              +   F  NLFGG     W+G +
Sbjct: 83  GFTDAYDFFTNLFGGAPFREWVGEL 107


>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 249 SFYPPVHRDLRKWARHAENLP 311
           S+ PP++ D R W  + ENLP
Sbjct: 479 SYDPPLYNDTRAWMIYEENLP 499


>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
           Itr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 575

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 527 LFGGFALLLWIGAILCF 577
           L+GG   L W+GA+ C+
Sbjct: 513 LYGGLCFLGWLGALFCY 529


>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
           4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 636

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +3

Query: 15  SRPSKVAPSPSAHSLLIPGFSLAP 86
           ++P+ V+P+P+AH   +P  S+ P
Sbjct: 123 NKPAAVSPNPAAHHAELPSGSVPP 146


>SPBC800.10c |||EPS15 repeat family actin cortical patch component
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1116

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 676  DTSNDHDGREHDAQVQIVISGLLYGTSLN 590
            DT+N+ D  + +  VQ V+SG L   + N
Sbjct: 1054 DTANESDNDDDELPVQQVVSGSLANDAFN 1082


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,847,107
Number of Sequences: 5004
Number of extensions: 59330
Number of successful extensions: 161
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)