Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18l01
         (691 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1427 + 33491847-33491888,33493504-33493623,33493740-334939...    39   0.004
03_02_0579 - 9606317-9606892,9607571-9607799,9607902-9608011,960...    30   2.0  
02_05_0177 + 26505956-26506202,26506838-26507247,26507448-265076...    30   2.0  
10_07_0144 - 13367579-13368805,13369540-13369578,13369662-133698...    29   2.6  
01_06_0366 - 28779899-28780543,28780813-28781076,28781165-287814...    29   2.6  
04_01_0078 - 879016-881288,884676-885141                               28   8.0  

>04_04_1427 +
           33491847-33491888,33493504-33493623,33493740-33493976,
           33494754-33495638,33495733-33495837,33495920-33496064,
           33496146-33496310,33496391-33496629,33496724-33496756,
           33496840-33496921,33497017-33497177,33497282-33497455,
           33497549-33497731,33497832-33498019,33498155-33498251
          Length = 951

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 30/111 (27%), Positives = 55/111 (49%)
 Frame = +2

Query: 329 GDLEDLKQELDIDYHKVTPEELYQRFQTHPENGLSHAKAKENLERDGPNALTPPKQTPEW 508
           G LE++K E  +D   +  EE++++ +   E GLS  +    +E  GPN L   K++   
Sbjct: 2   GGLEEIKNEA-VDLENIPIEEVFEQLKCTRE-GLSSEEGNRRIEMFGPNKLEEKKES--- 56

Query: 509 VKFCKNLFGGFALLLWIGAILCFIAYGIQASTVEEPADDNLYLGIVLAAVV 661
            K  K L   +  L W+  +   +A  + A+   +P D   ++GI++  V+
Sbjct: 57  -KILKFLGFMWNPLSWVMEMAAIMAIAL-ANGGGKPPDWEDFVGIIVLLVI 105


>03_02_0579 -
           9606317-9606892,9607571-9607799,9607902-9608011,
           9608898-9609275,9609380-9609658,9610044-9610168,
           9610269-9610335,9610582-9612006
          Length = 1062

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 22/104 (21%), Positives = 36/104 (34%)
 Frame = +2

Query: 380 TPEELYQRFQTHPENGLSHAKAKENLERDGPNALTPPKQTPEWVKFCKNLFGGFALLLWI 559
           TP E         + GLS  +A   L R GPN L        W    +        +L  
Sbjct: 33  TPSECLAELGVAADRGLSSEEAAARLRRYGPNELERHAAPSVWKLVLEQFDDTLVRILLA 92

Query: 560 GAILCFIAYGIQASTVEEPADDNLYLGIVLAAVVIVTGIFSYYQ 691
            A++ F+      +   E         +V+  ++IV  +   +Q
Sbjct: 93  AAVVSFVLALYDGAEGGEVGATAFVEPLVIFLILIVNAVVGVWQ 136


>02_05_0177 +
           26505956-26506202,26506838-26507247,26507448-26507624,
           26507775-26507999,26508089-26508265,26508357-26508593,
           26508855-26508944,26509102-26509254
          Length = 571

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
 Frame = +2

Query: 500 PEWVKFCKNLFGGFALLLWIGAILCFIAYGIQASTVEEPADDNLY---LGIVLAAVVIVT 670
           P W+   +  FGG   +  +  IL  I   I    V+E +  N +   L IV+  VV+  
Sbjct: 170 PTWIGHGEEFFGGVVSVNILAPILLIILTTILCYGVKESSAVNTFMTTLKIVIVIVVVFA 229

Query: 671 GIF 679
           G+F
Sbjct: 230 GVF 232


>10_07_0144 -
           13367579-13368805,13369540-13369578,13369662-13369826,
           13370083-13370193
          Length = 513

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 21/59 (35%), Positives = 27/59 (45%)
 Frame = +1

Query: 7   PPEAGRRKSRLRHPRTLFLYRVLV*HQDDIVPVRCDQST*NAHILSFPFGRGSRKGPVV 183
           P  AGRRK++       FL+RV        +P     +T NA +LSF  G G    P V
Sbjct: 215 PVGAGRRKNKNATAAAHFLHRVRACAAAAAMPAAPHDAT-NATVLSFGGGGGGHDAPPV 272


>01_06_0366 -
           28779899-28780543,28780813-28781076,28781165-28781431,
           28781546-28781774,28781868-28781985,28782229-28782486,
           28782585-28782858,28782950-28783475,28784289-28784527,
           28784626-28784847,28784912-28784914,28785124-28785299,
           28786147-28786201,28786288-28786557
          Length = 1181

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 23/62 (37%), Positives = 33/62 (53%)
 Frame = +1

Query: 166 RKGPVVAELEQSHPAPLRDTDETERRLVPFIRLYIETYENGRDTQKTSREKTETRRFRRS 345
           RKG +V +    H A ++D D    +L   IRL  ET+ + R     SR K+ +  FRRS
Sbjct: 581 RKGKIVEQ--GPHDALVKDPDGAYSQL---IRLQ-ETHRDERHKLPDSRSKSTSLSFRRS 634

Query: 346 QT 351
           +T
Sbjct: 635 RT 636


>04_01_0078 - 879016-881288,884676-885141
          Length = 912

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +2

Query: 335 LEDLKQELDIDYHKVTPEELYQRFQTHPENGLSHAKAKENLE 460
           +EDLKQ  ++ + KV  EE Y+  Q   +N L  +     LE
Sbjct: 502 VEDLKQLQELSHFKVRKEEAYRLKQLMKQNNLRGSLKISGLE 543


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,188,195
Number of Sequences: 37544
Number of extensions: 450736
Number of successful extensions: 1176
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1176
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)