Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18k22
         (535 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synth...   231   4e-63
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   2.0  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    23   2.0  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    22   4.5  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   4.5  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   6.0  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   6.0  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    21   7.9  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   7.9  

>AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synthase
           16 kDa proteolipidsubunit protein.
          Length = 156

 Score =  231 bits (564), Expect = 4e-63
 Identities = 113/123 (91%), Positives = 118/123 (95%)
 Frame = +3

Query: 165 ENNPIYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGI 344
           E++PIY PFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGI
Sbjct: 4   EDHPIYAPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGI 63

Query: 345 IAIYGLVVAVLIAGALQEPANYPLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTA 524
           IAIYGLVVAVLIAG L+EP  Y L+KGF+HLGAGLAVGFSGLAAGFAIGIVGDAGVRGTA
Sbjct: 64  IAIYGLVVAVLIAGGLEEPKGYTLFKGFVHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTA 123

Query: 525 QQP 533
           QQP
Sbjct: 124 QQP 126


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = -3

Query: 380 NQDSHDQTVDGNNTRHDDRNDRLHDQLRPHHRH 282
           NQ  H    D  N  ++  ND+ H   + ++RH
Sbjct: 430 NQARHSSKSDNQN--NNQHNDQAHHSSKSNNRH 460



 Score = 21.4 bits (43), Expect = 6.0
 Identities = 8/33 (24%), Positives = 15/33 (45%)
 Frame = -3

Query: 380 NQDSHDQTVDGNNTRHDDRNDRLHDQLRPHHRH 282
           NQD++    + N  RH  ++D  ++       H
Sbjct: 419 NQDNNHYNHNHNQARHSSKSDNQNNNQHNDQAH 451


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +1

Query: 163 LKIIQSTDPSLELWGRRLLSSS 228
           + I + TDP  E W RR L  S
Sbjct: 142 MTITELTDPVKEFWERRALQIS 163


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +3

Query: 330 VMAGIIAIYGLVVAVLIAGALQEPANY 410
           +++G+I   GL++ VLI G++ E   +
Sbjct: 413 IVSGLIT--GLIMRVLICGSISEEQKF 437


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 303 LIMKSIIPVVMAGIIAIYGLVVAVLIAGALQEPANYPL 416
           L++ SII   + G I +    VAV +   L+ P NY L
Sbjct: 46  LVLGSIIVGTVIGNILV---CVAVFLVRKLRRPCNYLL 80


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +1

Query: 82  VSWSECVQIVITVFGTCKYSH 144
           +SW E +QI + V    +Y H
Sbjct: 694 LSWLERIQIALDVLEGIRYLH 714


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +1

Query: 82  VSWSECVQIVITVFGTCKYSH 144
           +SW E +QI + V    +Y H
Sbjct: 732 LSWLERIQIALDVLEGIRYLH 752


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 12/29 (41%), Positives = 12/29 (41%)
 Frame = -1

Query: 505 ASPTMPMAKPAARPENPTAKPAPKWMNPL 419
           AS TM M K    PEN        W N L
Sbjct: 51  ASKTMAMMKGEYIPENALPVGIEIWRNKL 79


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +2

Query: 200 YGGGVCYHLQR 232
           YG G+ YHL +
Sbjct: 487 YGAGIVYHLSK 497


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,157
Number of Sequences: 438
Number of extensions: 3731
Number of successful extensions: 17
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15090993
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)