Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18k16
         (597 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1 |Sch...    52   5e-08
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb...    27   2.1  
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase...    25   6.3  
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21...    25   8.4  
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|...    25   8.4  

>SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 52.4 bits (120), Expect = 5e-08
 Identities = 39/105 (37%), Positives = 52/105 (49%), Gaps = 6/105 (5%)
 Frame = +3

Query: 264 VVVLGDIGRSPRMQYHALSLANNGLDVKIISYVETDP---LPEVLNNPHITVIKLHPFEL 434
           V+VLGDI RSPRMQYHA+S A  G  V ++ Y        L E   N     I   P  L
Sbjct: 29  VLVLGDIARSPRMQYHAVSFAKLGWKVDLLGYQHPGSSVGLFESHENIRFYPIPSLPAYL 88

Query: 435 K-WGPVVLKYIA--KTLWQSVSLMFTLFLTGRCDYLLGQNPPAIP 560
           +    +   ++   K L Q ++L + LF+     +L  QNPP IP
Sbjct: 89  QPKNRLQFLFLGPLKVLHQFLALNWALFVRKPASFLFIQNPPCIP 133


>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +3

Query: 309 HALSLANNGLDVKIISYVETDPLPEVLNNPHITVIKLHPF 428
           H   L++  LD   I  +E  PLP V  N HI   +L  F
Sbjct: 359 HLPLLSDEKLDKSAIDKIEPTPLPSVHMNSHIAKGELPKF 398


>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
           Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1448

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +3

Query: 447 VVLKYIAKTLWQSVSLMFTLFLTGRCDYLLGQNPPAIPSL 566
           VV+    + L     L + L L G+C+Y++  +PP+   L
Sbjct: 170 VVVTSFERDLIPFHELYYKLALEGKCNYVIRYSPPSSSKL 209


>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
           Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = +3

Query: 348 IISYVETDPLPEVLNNPHITVIKLHPFELK 437
           ++  + T+P  +VLN+  + + K+ PF L+
Sbjct: 257 MLDLLGTNPPEDVLNDIELKIYKIRPFNLE 286


>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
           Snf21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1199

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 8/75 (10%)
 Frame = -3

Query: 367 VSTYEIIFTSKPLLARDNA*YCI-----RGLLPMSPSTTTLATFLTLPNIMRASLKPELL 203
           ++TYE I   +PLL+R    Y I     R     S  T TL T+ +  +  R  L    L
Sbjct: 520 LTTYEYIIKDRPLLSRIKWIYMIIDEGHRMKNTQSKLTNTLTTYYS--SRYRLILTGTPL 577

Query: 202 RN---ELWYRITFVV 167
           +N   ELW  + FV+
Sbjct: 578 QNNLPELWALLNFVL 592


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,534,618
Number of Sequences: 5004
Number of extensions: 51481
Number of successful extensions: 95
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)