Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18k14
         (636 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    27   2.3  
SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces...    26   4.0  
SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit Git...    25   6.9  
SPAC732.01 |vma11||V-type ATPase proteolipid subunit|Schizosacch...    25   9.1  
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom...    25   9.1  

>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 17/51 (33%), Positives = 31/51 (60%)
 Frame = -2

Query: 356 THSTIATMIIATNS*IKNSSGHDSVDENDRACIFYIDVPSLFKSTWFYPTS 204
           +HS+ +++ I  +S + N++ H SV ++ ++  F + VPS   ST  Y TS
Sbjct: 474 SHSSASSLPITPSSYLSNTTLHSSV-QSSQSSQFTVSVPS---STQSYSTS 520


>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 497

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 13/50 (26%), Positives = 25/50 (50%)
 Frame = +3

Query: 324 CNYHRRDRAVCRKSKTPTPQDVSWHSSVEPLFRT*LYS*DREINDQFTGT 473
           C  +    A  +   + +P ++S HS+ +PL  T + S   +  D F+G+
Sbjct: 63  CEGYPNSAAQMQAMGSVSPPELSVHSAQQPLIPTSIASSSAQTGDTFSGS 112


>SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit
           Git5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 305

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 605 FHDAVPGYSSAHASPPSTETVAAGGKNN 522
           F +A   +    A  PST+++AAGG NN
Sbjct: 58  FFEAPSVWIMTCAFSPSTKSIAAGGLNN 85


>SPAC732.01 |vma11||V-type ATPase proteolipid
          subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 162

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 1  FSSFLCVAFVCAVLVETCLG 60
          +SSF   A VCA +V +CLG
Sbjct: 9  YSSFFGFAGVCASMVFSCLG 28


>SPBC713.04c |||U3 snoRNP-associated protein
           Utp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 854

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -3

Query: 553 RKPLLLVEKITARGVRYKSATAHCD*TVPVNWSLISR 443
           R P  L E+  A  V ++  T H D  V ++WS  SR
Sbjct: 123 RTPNSLEEREFAPFVLHREYTGHFDDIVSISWSADSR 159


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,500,045
Number of Sequences: 5004
Number of extensions: 48152
Number of successful extensions: 102
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)