Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18k13
         (644 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|ch...    30   0.33 
SPBC365.13c |hba1|caf1|Ran GTPase binding protein Hba1|Schizosac...    27   1.8  
SPBC651.12c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   2.3  
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    26   4.0  
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    26   5.3  
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom...    26   5.3  
SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|c...    26   5.3  
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |...    26   5.3  
SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit L17...    25   7.1  
SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac...    25   7.1  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   7.1  
SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr 3|...    25   7.1  
SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    25   9.3  

>SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 274

 Score = 29.9 bits (64), Expect = 0.33
 Identities = 19/63 (30%), Positives = 33/63 (52%)
 Frame = +2

Query: 452 SSNARGSDSQFNFRSGRRSANRFQGQGSSKRQPAAEPQFSNKGPGRSSTDRPKSGKVTKA 631
           S+N +GS+ Q + +S     +R      S R+P+   + SN+G  RSS    +S + +  
Sbjct: 146 STNLKGSEIQISKKSPPSLFDRISDMPHSARKPSRSSR-SNRGFNRSSKKDDRSFRSSSK 204

Query: 632 KTS 640
           K+S
Sbjct: 205 KSS 207


>SPBC365.13c |hba1|caf1|Ran GTPase binding protein
           Hba1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 399

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +2

Query: 458 NARGSDSQFNFRSGRRSANRFQGQGSSKRQPAAEPQFSNKGPGRSS 595
           N + S   F+      SA  F+ Q  S  +  +EP+ ++KG G S+
Sbjct: 211 NDKKSSENFDELLANTSAKAFENQKGSAGETKSEPKEADKGSGDST 256


>SPBC651.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 273

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = +2

Query: 452 SSNARGSDSQFNFRSGRRSANRFQGQGSSKRQPAAEPQFSNKGPGRSST 598
           S N + S+     R      + F      +R+PA  PQ S++ P  SST
Sbjct: 56  SFNGKSSNLVRKRRGLDEDIDEFSSSSEDERKPARHPQSSSQKPFASST 104


>SPAC2F7.03c |pom1||DYRK family protein kinase
           Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = -1

Query: 425 NPAGMSVSLNSKV*NHQSRQTRHSNAYNRYRRCSRSGSWLVQNNGDCRN*VIS 267
           NP+ ++ S + +  +  S       + + Y R S+   W  QNNG   + VIS
Sbjct: 161 NPSSLNTSSHHRT-SSISNSKSFGTSLSYYNRSSKPSDWNQQNNGGHLSGVIS 212


>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1485

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +2

Query: 329 NVDSDYTRYYDESVGSGDFIPLNSRKR 409
           ++D+D++ Y DE+ G  + +P  + KR
Sbjct: 2   SIDADFSDYEDEASGDENVLPNTTTKR 28


>SPCC1183.07 |||U3 snoRNP-associated protein
           Rrp5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1690

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 16/26 (61%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +2

Query: 440 NKRFSSNA-RGSDSQFNFRSGRRSAN 514
           NKR  SNA  GSDSQ N R    SAN
Sbjct: 4   NKRKRSNASEGSDSQGNERISSLSAN 29


>SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +2

Query: 356 YDESVGSGDFIPLNSRKRSYQPDWETNPNKRFSSNARGS 472
           +  S+G G   PLN+    Y P  E   +K + S+   S
Sbjct: 255 FPNSIGEGVEYPLNANALPYLPQTEEKNDKLYKSSVPAS 293


>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 649

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +3

Query: 450 FRATLEAPIANSIFAQGAGPLIVFKAKGLLSANPLQNLS 566
           F A  +AP  +++ +Q AGP +    +G+  A+  Q+L+
Sbjct: 134 FEAKNDAPRRSTLHSQNAGPNVNSSLEGMKIAHGFQDLN 172


>SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit
           L17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 268

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = -3

Query: 483 NWLSEPLALLEKRLLGLVSQSGWYERFLEFKGMKSPEPT 367
           N LS+PL        G V +  W ER    KG +SP  T
Sbjct: 73  NELSDPLPAEFYFKKGSVGEKDWQERQKTLKGKESPFET 111


>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 446

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +2

Query: 23  ASNVTSIISVDTN*LITKMKHNRGLGGYGYSNNVMN 130
           +S++   I V TN +    + NRG  GY  S N++N
Sbjct: 329 SSSLNFRIPVPTNVVKANPRVNRGKAGYEPSENIIN 364


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 21/89 (23%), Positives = 34/89 (38%)
 Frame = +2

Query: 374 SGDFIPLNSRKRSYQPDWETNPNKRFSSNARGSDSQFNFRSGRRSANRFQGQGSSKRQPA 553
           S  F  L+S   S QP   +  +  FSS A  S S     S    ++      SS     
Sbjct: 172 SSTFSSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSSTLT 231

Query: 554 AEPQFSNKGPGRSSTDRPKSGKVTKAKTS 640
           +    ++  P  SS+    S  ++ + +S
Sbjct: 232 SSSLSTSSIPSTSSSSSSTSSSLSSSSSS 260


>SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 531

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = +3

Query: 261 IVRNHSITTVPVILNEPASRTRTTSIAIIRVTM 359
           +  + S TT+PVI+ +  ++   + IA++R T+
Sbjct: 54  VTSDASTTTIPVIIEKWRNKITKSEIAMVRYTV 86


>SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 483 NWLSEPLALLEKRLLGLVSQSGWYER 406
           +WL   LA+ E R +  +S+S WY R
Sbjct: 162 SWLLSSLAVNEFRTIQNISKSIWYTR 187


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,405,092
Number of Sequences: 5004
Number of extensions: 45759
Number of successful extensions: 136
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)