Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc18k13
(644 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1379 + 36801473-36801889 33 0.15
04_04_1475 + 33856351-33856582,33857614-33857781,33858156-338582... 32 0.45
01_05_0292 + 20518668-20519090,20519213-20519281,20520204-205204... 31 0.59
03_01_0611 + 4493618-4493641,4494705-4494730,4495758-4497471,449... 29 2.4
05_01_0092 - 609537-609941,610067-610328,610624-610731,611083-61... 29 3.2
11_03_0050 - 9323946-9324143,9324161-9324163 28 5.5
08_02_0054 + 11729282-11729373,11730258-11730417 28 5.5
01_04_0054 - 15456668-15459691 28 5.5
01_05_0406 + 21875376-21875451,21875570-21875610,21876245-218763... 28 7.3
06_02_0013 - 10581449-10585105 27 9.7
06_01_0114 - 892599-893070,894115-894457,894896-895151 27 9.7
05_05_0363 - 24424224-24424538,24424710-24425101,24425192-244253... 27 9.7
>01_06_1379 + 36801473-36801889
Length = 138
Score = 33.5 bits (73), Expect = 0.15
Identities = 29/101 (28%), Positives = 43/101 (42%)
Frame = +2
Query: 338 SDYTRYYDESVGSGDFIPLNSRKRSYQPDWETNPNKRFSSNARGSDSQFNFRSGRRSANR 517
S+ TR E+ G G ++ + S+ E + R S ARG+ RS R +A R
Sbjct: 6 SECTRITPETTGGGK-PTISLQASSWSSRMEPSDPDRRSRLARGACGSRLLRSARWTATR 64
Query: 518 FQGQGSSKRQPAAEPQFSNKGPGRSSTDRPKSGKVTKAKTS 640
F + + A P + KGP + R S T A+ S
Sbjct: 65 FYRRARASVARAFRPASTKKGPASCAASR--SPDCTPARNS 103
>04_04_1475 +
33856351-33856582,33857614-33857781,33858156-33858261,
33858391-33858442,33858525-33858642,33858736-33858766,
33858962-33858985,33859075-33859199,33860087-33860168,
33860319-33860441,33860539-33860592,33860669-33860738,
33861276-33861309,33861824-33862170
Length = 521
Score = 31.9 bits (69), Expect = 0.45
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +2
Query: 491 RSGRRSANRFQGQGSSKRQPAAEPQFSNKG-PGRSSTDRPKSGKV 622
R GR+ +NR +G+G+ K P +P +G P ++ + K+G +
Sbjct: 463 RRGRKPSNRGRGRGAKKATPEPKPSARGRGRPKKTESPAQKTGSL 507
>01_05_0292 +
20518668-20519090,20519213-20519281,20520204-20520473,
20520734-20521084,20521251-20521528,20522755-20523099,
20523346-20523911,20525155-20525528
Length = 891
Score = 31.5 bits (68), Expect = 0.59
Identities = 25/78 (32%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Frame = +2
Query: 398 SRKRSYQPDWETNPNKRFSSNARGSDSQFNFRSGRRSANRFQGQGSSKRQPAAEPQFSNK 577
SR RSY + + ++ S A S +G SA G G KR P A+P ++
Sbjct: 628 SRSRSYTRNRRASRSRSRSPGA--SRRHERSATGSGSALPDSGHGERKRTPEADPSRNHT 685
Query: 578 GPGRSSTDR-PKSGKVTK 628
DR P+ GKV K
Sbjct: 686 NHSDPKDDRHPEDGKVGK 703
>03_01_0611 + 4493618-4493641,4494705-4494730,4495758-4497471,
4498179-4499263,4499351-4500296
Length = 1264
Score = 29.5 bits (63), Expect = 2.4
Identities = 20/81 (24%), Positives = 33/81 (40%)
Frame = +2
Query: 365 SVGSGDFIPLNSRKRSYQPDWETNPNKRFSSNARGSDSQFNFRSGRRSANRFQGQGSSKR 544
S S P ++ K+S+ + K S GSD + S R + + ++K
Sbjct: 1049 STPSSPLSPSSTPKQSWSFSGTPSELKHSSKLENGSDIEARPPSARNNHEKSSWLQTAKE 1108
Query: 545 QPAAEPQFSNKGPGRSSTDRP 607
QPA P ++ P S + P
Sbjct: 1109 QPAPPPSVTSGNPSPSPSPSP 1129
>05_01_0092 -
609537-609941,610067-610328,610624-610731,611083-611204,
611295-611366,611531-611590,611692-611874
Length = 403
Score = 29.1 bits (62), Expect = 3.2
Identities = 19/58 (32%), Positives = 24/58 (41%)
Frame = +2
Query: 470 SDSQFNFRSGRRSANRFQGQGSSKRQPAAEPQFSNKGPGRSSTDRPKSGKVTKAKTSL 643
S Q + RRS N +G S K P+A FS G G S S + K + L
Sbjct: 346 SSLQLTRKRSRRSHNLSEGSSSFKGLPSAMGSFSKLGRGSSRMADSDSSNLDKPEHDL 403
>11_03_0050 - 9323946-9324143,9324161-9324163
Length = 66
Score = 28.3 bits (60), Expect = 5.5
Identities = 18/58 (31%), Positives = 29/58 (50%)
Frame = +2
Query: 326 NNVDSDYTRYYDESVGSGDFIPLNSRKRSYQPDWETNPNKRFSSNARGSDSQFNFRSG 499
+ VD+D+ R+Y++S+ DF N S + D++ N N S + G N R G
Sbjct: 13 DEVDNDFERWYNKSLLKMDF---NENPLSEEEDFDDNDN--MSGDNTGDKDDNNERRG 65
>08_02_0054 + 11729282-11729373,11730258-11730417
Length = 83
Score = 28.3 bits (60), Expect = 5.5
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
Frame = +2
Query: 332 VDSDYTRYYDESVGSGD-----FIPLNSRK-RSYQPDWETNPNKRFSS 457
VDS Y Y +ES+G D +P + + +P+W+ NP K S
Sbjct: 35 VDSYYKWYGEESLGHQDDDMMRLLPQKANADKKLEPEWQANPRKMMLS 82
>01_04_0054 - 15456668-15459691
Length = 1007
Score = 28.3 bits (60), Expect = 5.5
Identities = 16/60 (26%), Positives = 29/60 (48%)
Frame = +2
Query: 389 PLNSRKRSYQPDWETNPNKRFSSNARGSDSQFNFRSGRRSANRFQGQGSSKRQPAAEPQF 568
P ++ ++S QP T P + ++ + + R++N +G GSS R P+A F
Sbjct: 170 PTHNTQQSAQPKQSTQPMQ--ATQPKHATEPMEKTDANRASNAKEGYGSSVRPPSAGEAF 227
>01_05_0406 +
21875376-21875451,21875570-21875610,21876245-21876314,
21876410-21876558,21876671-21876766,21876863-21876933,
21877119-21877267,21877400-21877463,21877547-21877631,
21878079-21878139,21879005-21879144,21879266-21879559
Length = 431
Score = 27.9 bits (59), Expect = 7.3
Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 5/74 (6%)
Frame = +2
Query: 392 LNSRKRSYQPDWETNPNKRFSSNARGSDSQFNFR----SGRRSANRFQGQGSSKRQPAAE 559
L+ +K +PD T+ + FSS+ S + R S R + + S R P A
Sbjct: 316 LSKQKSPVRPDMSTSKDALFSSSTMLGRSSGSLRRPVVSSSRELQSSEAEPSRSRTPDAS 375
Query: 560 P-QFSNKGPGRSST 598
P F P R S+
Sbjct: 376 PGTFQRSAPPRRSS 389
>06_02_0013 - 10581449-10585105
Length = 1218
Score = 27.5 bits (58), Expect = 9.7
Identities = 17/72 (23%), Positives = 31/72 (43%)
Frame = +2
Query: 401 RKRSYQPDWETNPNKRFSSNARGSDSQFNFRSGRRSANRFQGQGSSKRQPAAEPQFSNKG 580
R RS + E + + D+Q + +S + +G+ +K QP+ E Q +N
Sbjct: 415 RNRSIDREQENSQANHLQTELE-PDAQVK-ENALQSTDIEEGESHAKNQPSGECQSANSE 472
Query: 581 PGRSSTDRPKSG 616
+D P +G
Sbjct: 473 EAEPDSDHPSAG 484
>06_01_0114 - 892599-893070,894115-894457,894896-895151
Length = 356
Score = 27.5 bits (58), Expect = 9.7
Identities = 22/72 (30%), Positives = 28/72 (38%), Gaps = 3/72 (4%)
Frame = +2
Query: 431 TNPNKRFSSNARGSDSQFNFRSGRRSANRFQGQGSSKRQ---PAAEPQFSNKGPGRSSTD 601
T+ K S DS++ R R NR + SK P ++PQ SN TD
Sbjct: 106 TDGKKWRCSKEAHPDSKYCERHMHRGRNRSRKPVESKTAAPAPQSQPQLSNVTTATHDTD 165
Query: 602 RPKSGKVTKAKT 637
P AKT
Sbjct: 166 APLPSLTVGAKT 177
>05_05_0363 -
24424224-24424538,24424710-24425101,24425192-24425381,
24425549-24425730,24427328-24427391
Length = 380
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +3
Query: 471 PIANSIFAQGAGPLIVFKAKGLLSANPLQNLSFPTKAL 584
P I A PL K K + A+PL ++ FP K L
Sbjct: 267 PTREQILVHWAAPLFRDKKKFVKMADPLLDMKFPLKGL 304
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,466,930
Number of Sequences: 37544
Number of extensions: 300991
Number of successful extensions: 896
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 874
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 895
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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