Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc18k13
(644 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41017-3|AAC48213.1| 548|Caenorhabditis elegans Hypothetical pr... 32 0.40
U40059-1|AAA81138.3| 867|Caenorhabditis elegans Hypothetical pr... 29 3.7
AL021492-3|CAA16382.3| 893|Caenorhabditis elegans Hypothetical ... 29 3.7
U39850-2|AAA81056.1| 451|Caenorhabditis elegans Hypothetical pr... 28 4.9
DQ641631-1|ABG29106.1| 451|Caenorhabditis elegans sex determini... 28 4.9
AL031635-3|CAB54383.1| 149|Caenorhabditis elegans Hypothetical ... 28 4.9
AL031635-2|CAA21040.1| 164|Caenorhabditis elegans Hypothetical ... 28 4.9
AF099000-2|AAK71875.1| 337|Caenorhabditis elegans Serpentine re... 28 4.9
Z73896-2|CAA98059.2| 1369|Caenorhabditis elegans Hypothetical pr... 28 6.5
AF271389-1|AAF76200.1| 1369|Caenorhabditis elegans MSH-5 protein. 28 6.5
Z81086-4|CAB03117.1| 342|Caenorhabditis elegans Hypothetical pr... 27 8.6
>U41017-3|AAC48213.1| 548|Caenorhabditis elegans Hypothetical
protein T26C11.4 protein.
Length = 548
Score = 31.9 bits (69), Expect = 0.40
Identities = 24/88 (27%), Positives = 39/88 (44%)
Frame = +2
Query: 317 QNANNVDSDYTRYYDESVGSGDFIPLNSRKRSYQPDWETNPNKRFSSNARGSDSQFNFRS 496
Q A N+ Y+ S F +S R +QP +N + + +R Q +FRS
Sbjct: 161 QVAQNLSRPYSNQNGHQPLSSGFFFNSSPGRQHQPQGASNAG--YDNGSRHCRGQDSFRS 218
Query: 497 GRRSANRFQGQGSSKRQPAAEPQFSNKG 580
GR A R Q + S+ ++ Q ++G
Sbjct: 219 GRDDAARDQREFLSRSMRSSGSQRQDQG 246
>U40059-1|AAA81138.3| 867|Caenorhabditis elegans Hypothetical
protein K03C7.1 protein.
Length = 867
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/80 (20%), Positives = 35/80 (43%)
Frame = +2
Query: 389 PLNSRKRSYQPDWETNPNKRFSSNARGSDSQFNFRSGRRSANRFQGQGSSKRQPAAEPQF 568
P + + ++P WE +P++ ++ + + ++ +P +P+
Sbjct: 178 PKPAAPKKWKPPWEEDPDE-----PEEPEADYTMPAPKKPDTEDPADPLGGPKPK-DPKL 231
Query: 569 SNKGPGRSSTDRPKSGKVTK 628
+ K P + TD+PKS V K
Sbjct: 232 AKKAPAKKPTDKPKSKDVPK 251
>AL021492-3|CAA16382.3| 893|Caenorhabditis elegans Hypothetical
protein Y45F10D.7 protein.
Length = 893
Score = 28.7 bits (61), Expect = 3.7
Identities = 25/97 (25%), Positives = 39/97 (40%)
Frame = +2
Query: 311 SFQNANNVDSDYTRYYDESVGSGDFIPLNSRKRSYQPDWETNPNKRFSSNARGSDSQFNF 490
++Q NN +T +D DFI N+ P N F + G QFN
Sbjct: 370 TWQTRNNTSGAFTLEHDRFKKKVDFIDANATALCVSP----CGNFVFIGYSTGHIDQFNA 425
Query: 491 RSGRRSANRFQGQGSSKRQPAAEPQFSNKGPGRSSTD 601
+SGR + K + + P+ KGP +++ D
Sbjct: 426 QSGRHVHSFTASTTVKKSKKSKNPR---KGPTKTNGD 459
>U39850-2|AAA81056.1| 451|Caenorhabditis elegans Hypothetical
protein F52C9.7 protein.
Length = 451
Score = 28.3 bits (60), Expect = 4.9
Identities = 21/74 (28%), Positives = 35/74 (47%)
Frame = +2
Query: 398 SRKRSYQPDWETNPNKRFSSNARGSDSQFNFRSGRRSANRFQGQGSSKRQPAAEPQFSNK 577
SRK S +P + + R S ++ RS RSA R + + S R+ EP+ ++
Sbjct: 192 SRKLSRKPSSSRSKSPRRSREDPRKVARKPSRSRSRSAERLRRKSRSPRRSREEPRKMSR 251
Query: 578 GPGRSSTDRPKSGK 619
RS+ D+ S +
Sbjct: 252 SRSRSA-DKASSSR 264
>DQ641631-1|ABG29106.1| 451|Caenorhabditis elegans sex determining
protein MOG-3 protein.
Length = 451
Score = 28.3 bits (60), Expect = 4.9
Identities = 21/74 (28%), Positives = 35/74 (47%)
Frame = +2
Query: 398 SRKRSYQPDWETNPNKRFSSNARGSDSQFNFRSGRRSANRFQGQGSSKRQPAAEPQFSNK 577
SRK S +P + + R S ++ RS RSA R + + S R+ EP+ ++
Sbjct: 192 SRKLSRKPSSSRSKSPRRSREDPRKVARKPSRSRSRSAERLRRKSRSPRRSREEPRKMSR 251
Query: 578 GPGRSSTDRPKSGK 619
RS+ D+ S +
Sbjct: 252 SRSRSA-DKASSSR 264
>AL031635-3|CAB54383.1| 149|Caenorhabditis elegans Hypothetical
protein Y47D3B.2b protein.
Length = 149
Score = 28.3 bits (60), Expect = 4.9
Identities = 19/65 (29%), Positives = 24/65 (36%)
Frame = +2
Query: 422 DWETNPNKRFSSNARGSDSQFNFRSGRRSANRFQGQGSSKRQPAAEPQFSNKGPGRSSTD 601
D++ + F RG F R A FQG KR A +G GR+ D
Sbjct: 57 DYKRGGARAFYDEKRGGARAFLTEMKRGGARVFQGFEDEKRGGARAFMMDKRGGGRAFGD 116
Query: 602 RPKSG 616
K G
Sbjct: 117 MMKRG 121
>AL031635-2|CAA21040.1| 164|Caenorhabditis elegans Hypothetical
protein Y47D3B.2a protein.
Length = 164
Score = 28.3 bits (60), Expect = 4.9
Identities = 19/65 (29%), Positives = 24/65 (36%)
Frame = +2
Query: 422 DWETNPNKRFSSNARGSDSQFNFRSGRRSANRFQGQGSSKRQPAAEPQFSNKGPGRSSTD 601
D++ + F RG F R A FQG KR A +G GR+ D
Sbjct: 57 DYKRGGARAFYDEKRGGARAFLTEMKRGGARVFQGFEDEKRGGARAFMMDKRGGGRAFGD 116
Query: 602 RPKSG 616
K G
Sbjct: 117 MMKRG 121
>AF099000-2|AAK71875.1| 337|Caenorhabditis elegans Serpentine
receptor, class h protein128 protein.
Length = 337
Score = 28.3 bits (60), Expect = 4.9
Identities = 22/91 (24%), Positives = 44/91 (48%), Gaps = 5/91 (5%)
Frame = +3
Query: 264 VRNHSITTVPV----ILNEPASRTRTTSIAIIRVTMTSLSALVISYL*IQGNAHTSRIGK 431
++ ++I T+P I P +TSI+ I + M LS V + + + K
Sbjct: 166 IQKYTIETIPCLPPKIYENPNFFVASTSISFILLDMGLLSIFVFAQIIFLIVYSVKELQK 225
Query: 432 PIL-ISAFRATLEAPIANSIFAQGAGPLIVF 521
+ +S +TL+ +N+++AQ + P+I +
Sbjct: 226 RLKNLSKVTSTLQKRFSNALYAQVSIPMIAY 256
>Z73896-2|CAA98059.2| 1369|Caenorhabditis elegans Hypothetical protein
F09E8.3 protein.
Length = 1369
Score = 27.9 bits (59), Expect = 6.5
Identities = 28/118 (23%), Positives = 49/118 (41%), Gaps = 3/118 (2%)
Frame = +2
Query: 269 KSLNYDSPRYFERASFQNANNVDSDYTRYYDESVGSGDFIPLNSRKRSYQPDWETNPNKR 448
+S N +P +F +F + + + S T YD +V P +S +R +PD + N +
Sbjct: 1132 RSSNEVNPEFFNIFNFPDDSILKSQDT--YDPNV-----TPRSSSRRELRPDVSHSQNSQ 1184
Query: 449 FSSNARGSDSQFNFRSGRRSANRFQGQGSSKRQPAA---EPQFSNKGPGRSSTDRPKS 613
F +QF+ + ++S F G P + F+N G D K+
Sbjct: 1185 FGEVFSELGTQFSIFNSQQS---FPGNSMGTTNPDCSIFDDFFANSQDGEKKIDSTKT 1239
>AF271389-1|AAF76200.1| 1369|Caenorhabditis elegans MSH-5 protein.
Length = 1369
Score = 27.9 bits (59), Expect = 6.5
Identities = 28/118 (23%), Positives = 49/118 (41%), Gaps = 3/118 (2%)
Frame = +2
Query: 269 KSLNYDSPRYFERASFQNANNVDSDYTRYYDESVGSGDFIPLNSRKRSYQPDWETNPNKR 448
+S N +P +F +F + + + S T YD +V P +S +R +PD + N +
Sbjct: 1132 RSSNEVNPEFFNIFNFPDDSILKSQDT--YDPNV-----TPRSSSRRELRPDVSHSQNSQ 1184
Query: 449 FSSNARGSDSQFNFRSGRRSANRFQGQGSSKRQPAA---EPQFSNKGPGRSSTDRPKS 613
F +QF+ + ++S F G P + F+N G D K+
Sbjct: 1185 FGEVFSELGTQFSIFNSQQS---FPGNSMGTTNPDCSIFDDFFANSQDGEKKIDSTKT 1239
>Z81086-4|CAB03117.1| 342|Caenorhabditis elegans Hypothetical
protein F53B6.4 protein.
Length = 342
Score = 27.5 bits (58), Expect = 8.6
Identities = 18/81 (22%), Positives = 32/81 (39%)
Frame = +2
Query: 398 SRKRSYQPDWETNPNKRFSSNARGSDSQFNFRSGRRSANRFQGQGSSKRQPAAEPQFSNK 577
+RK + + N + + + +++ + RRS+ + SSK S K
Sbjct: 67 NRKTVHAKNKNKNKSSKSAKSSKSTRGASKSGKSRRSSKAKHSKRSSKSSKKGTSGKSGK 126
Query: 578 GPGRSSTDRPKSGKVTKAKTS 640
G + KS K K KT+
Sbjct: 127 GSSKRGGKSSKSSKSKKVKTA 147
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,110,075
Number of Sequences: 27780
Number of extensions: 250957
Number of successful extensions: 763
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 763
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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