Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18k13
         (644 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    26   0.36 
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             26   0.36 
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    25   0.47 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.4  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   4.4  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   5.8  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    21   7.7  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 25.8 bits (54), Expect = 0.36
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
 Frame = +2

Query: 449 FSSNARGSDSQFNFRSG-RRSANRFQGQGSSKRQPAAEPQFSNKGPGRSSTDRPKSGKVT 625
           +S+    S SQ +  S   R++NR +  G   R+P+     +   P   S  + K  K  
Sbjct: 17  YSNTCSNSQSQRSSGSSISRNSNRSESSGYCGRRPSTFGSSNEALPQPISKRKDKEHKKK 76

Query: 626 KAKTSL 643
           K+KT L
Sbjct: 77  KSKTIL 82


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 25.8 bits (54), Expect = 0.36
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
 Frame = +2

Query: 449 FSSNARGSDSQFNFRSG-RRSANRFQGQGSSKRQPAAEPQFSNKGPGRSSTDRPKSGKVT 625
           +S+    S SQ +  S   R++NR +  G   R+P+     +   P   S  + K  K  
Sbjct: 17  YSNTCSNSQSQRSSGSSISRNSNRSESSGYCGRRPSTFGSSNEALPQPISKRKDKEHKKK 76

Query: 626 KAKTSL 643
           K+KT L
Sbjct: 77  KSKTIL 82


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 25.4 bits (53), Expect = 0.47
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +2

Query: 404 KRSYQPDWETNPNKRFSSNARGSD-SQFNFRSGRRSA 511
           +R YQP +   P++RF+S    S  S  + RS R S+
Sbjct: 414 RRRYQPAFRCKPSQRFASGRYYSAYSLHHVRSSRESS 450


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
 Frame = +2

Query: 488  FRSGR----RSANRFQGQGSSKRQPAAEPQFSNKGPGRSSTDRPKSGK 619
            F+ GR    + AN  QGQ  ++ +P ++     K        RPK GK
Sbjct: 992  FKRGRYTPPQPANAQQGQAQAQAKPQSQEANKPKPATGGKGTRPKRGK 1039


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -1

Query: 215 HAYASTNPTPNLYAEGVQSLEVL 147
           H     +  PN+Y  GVQ LE +
Sbjct: 66  HEKGGASCGPNVYNRGVQRLEAM 88


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +2

Query: 59  N*LITKMKHNRGLGGYGYSNNV 124
           N L T   HNR LGG G  N +
Sbjct: 406 NGLHTTTAHNRFLGGIGGYNGL 427



 Score = 21.4 bits (43), Expect = 7.7
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -3

Query: 81  FILVIS*FVSTEIILVTLDALRRNTQ 4
           +I  I+  V T IIL    ALR NT+
Sbjct: 491 WIFTIASIVGTFIILCEAPALRDNTK 516


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -1

Query: 356 SNAYNRYRRCSR 321
           S+ Y+R RRCSR
Sbjct: 228 SSRYSRERRCSR 239



 Score = 21.4 bits (43), Expect = 7.7
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = -1

Query: 377 QSRQTRHSNAYNRYRRCSRSGS 312
           + R  ++ N+Y +YR  S+  S
Sbjct: 279 EQRSYKNENSYRKYRETSKERS 300


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,390
Number of Sequences: 438
Number of extensions: 3429
Number of successful extensions: 18
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)