Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18k08
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar...    26   4.1  
SPAC23D3.03c |||GTPase activating protein |Schizosaccharomyces p...    26   5.5  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    25   7.2  
SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   7.2  

>SPAC13G6.06c |||glycine cleavage complex subunit
           P|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1017

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +2

Query: 374 ISTF*SIQPNQYSHTL*ISKSSLTLIQNN*G*LNKIVKT 490
           +  F S+ PN+ +  +  S+S  T + NN    NK++K+
Sbjct: 92  LMAFGSVNPNEKNPPVNYSESEFTTLANNVANQNKLIKS 130


>SPAC23D3.03c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 472

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = +3

Query: 276 LKKIFVFVILPNIQTR*LYRHVFCIEQFIYIMLLARF 386
           L+K+F+ ++ P I +R L  +VF  + F   +L+A F
Sbjct: 394 LRKLFIPMVSPEIASRILDCYVFEEDSFFIQLLMAVF 430


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
            Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 117  VLCFKRNFLSFKGISGCNI 173
            +LCF+ +  SF GI  CN+
Sbjct: 1848 LLCFQSHCCSFNGIGECNL 1866


>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 646

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = +2

Query: 290 CFRNSSKYTNTLI 328
           CFRNSS +T TLI
Sbjct: 556 CFRNSSDWTRTLI 568


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,324,520
Number of Sequences: 5004
Number of extensions: 44100
Number of successful extensions: 73
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)