Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc18k02
(626 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 149 3e-37
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 87 1e-18
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 81 1e-16
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 73 5e-14
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 62 5e-11
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 62 6e-11
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 58 1e-09
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 58 1e-09
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 57 2e-09
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 57 2e-09
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 56 3e-09
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 52 5e-08
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 49 5e-07
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 47 3e-06
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 46 3e-06
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 45 1e-05
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 45 1e-05
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 43 3e-05
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 36 0.004
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 36 0.005
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 35 0.008
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 33 0.034
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 33 0.034
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 30 0.24
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 29 0.42
SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa... 27 1.7
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 27 1.7
SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2 |... 25 6.8
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 25 6.8
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ... 25 9.0
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 149 bits (361), Expect = 3e-37
Identities = 66/121 (54%), Positives = 86/121 (71%)
Frame = +3
Query: 258 NMRRPDWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEA 437
N+ + DW + +L PF K+FY H V RS EV EYR E+ V G+ V P+ FEEA
Sbjct: 68 NLVKKDWKNETLIPFQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEA 127
Query: 438 NFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQ 617
FP+YV + VK +G++ PTPIQ Q WP+AMSG+++VG++ TGSGKTL+Y LPAIVHIN Q
Sbjct: 128 GFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVHINAQ 187
Query: 618 P 620
P
Sbjct: 188 P 188
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 87.4 bits (207), Expect = 1e-18
Identities = 40/119 (33%), Positives = 70/119 (58%), Gaps = 1/119 (0%)
Frame = +3
Query: 273 DWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQYFEEANFPD 449
D ++ + F K+FY + SP EV+E R + + + + G++ P+ + +
Sbjct: 368 DHSKINYEDFKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSA 427
Query: 450 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPI 626
+ ++GY++PT IQAQ P SG++++GVA+TGSGKT+A++LP HI +Q P+
Sbjct: 428 QTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPL 486
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 81.0 bits (191), Expect = 1e-16
Identities = 32/86 (37%), Positives = 59/86 (68%)
Frame = +3
Query: 369 RNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG 548
+ ++ +++ G ++ NP++ +EEA P + + +K + YKEP+ IQ P+ + K+L+G
Sbjct: 232 KEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIG 291
Query: 549 VAQTGSGKTLAYILPAIVHINNQPPI 626
+A+TGSGKT A+I+P I+ I+ PP+
Sbjct: 292 IAETGSGKTAAFIIPLIIAISKLPPL 317
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 72.5 bits (170), Expect = 5e-14
Identities = 31/66 (46%), Positives = 50/66 (75%)
Frame = +3
Query: 414 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILP 593
PI F+E + +++G+K YKEPTPIQA WP ++G+++VG+A+TGSGKT+A+ +P
Sbjct: 165 PILQFDELDVSAKLREGLKN--YKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIP 222
Query: 594 AIVHIN 611
A+ ++N
Sbjct: 223 ALQYLN 228
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 62.5 bits (145), Expect = 5e-11
Identities = 26/65 (40%), Positives = 43/65 (66%)
Frame = +3
Query: 426 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 605
F+E D + + + +G+K PTPIQ + P+ ++ ++++G+AQTGSGKT A+ LP I
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQE 107
Query: 606 INNQP 620
+ N P
Sbjct: 108 LWNNP 112
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 62.1 bits (144), Expect = 6e-11
Identities = 28/72 (38%), Positives = 42/72 (58%)
Frame = +3
Query: 384 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTG 563
V VSG ++ P+ F ++ Q +K GY +PTP+Q PI SG++L+ AQTG
Sbjct: 158 VEVSGGDIE-PVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTG 216
Query: 564 SGKTLAYILPAI 599
SGKT ++ P +
Sbjct: 217 SGKTAGFLFPIL 228
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 58.0 bits (134), Expect = 1e-09
Identities = 27/82 (32%), Positives = 50/82 (60%)
Frame = +3
Query: 354 EVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 533
E E+ R V ++ + I+ F + + +Q+ +K MG++ T IQ + P ++G
Sbjct: 68 ENEDERVQKSVNLNASSTSD-IEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAG 126
Query: 534 KNLVGVAQTGSGKTLAYILPAI 599
++++G A+TGSGKTLA+++P I
Sbjct: 127 RDVLGAAKTGSGKTLAFLIPTI 148
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 58.0 bits (134), Expect = 1e-09
Identities = 23/63 (36%), Positives = 41/63 (65%)
Frame = +3
Query: 426 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 605
F+ + + + G+K PTPIQ + P+ + G+++VG+A+TGSGKT A+++P I H
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEH 130
Query: 606 INN 614
+ +
Sbjct: 131 LKS 133
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 57.2 bits (132), Expect = 2e-09
Identities = 25/65 (38%), Positives = 42/65 (64%)
Frame = +3
Query: 426 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 605
F+ N + +G+ +G++ PT IQ + P+A+ GK++VG A TGSGKT A+I+P +
Sbjct: 261 FQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILER 320
Query: 606 INNQP 620
+ +P
Sbjct: 321 LLYRP 325
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 56.8 bits (131), Expect = 2e-09
Identities = 25/56 (44%), Positives = 36/56 (64%)
Frame = +3
Query: 426 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILP 593
F+ N +++ V G+K+ TP+QA P+ + K+LV A TGSGKTLAY+LP
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLP 58
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 56.4 bits (130), Expect = 3e-09
Identities = 25/77 (32%), Positives = 46/77 (59%)
Frame = +3
Query: 396 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKT 575
G+ + + F + N +Q+ + +++PT +Q++ P+A+ GK+LV A+TGSGKT
Sbjct: 6 GIREESSEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKT 65
Query: 576 LAYILPAIVHINNQPPI 626
AY++P + + Q I
Sbjct: 66 AAYLIPILELLLKQKQI 82
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 52.4 bits (120), Expect = 5e-08
Identities = 20/64 (31%), Positives = 42/64 (65%)
Frame = +3
Query: 426 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 605
FE+ + G+ G++ P+PIQ + PIA+SG++++ A+ G+GKT A+++P++
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEK 105
Query: 606 INNQ 617
++ +
Sbjct: 106 VDTK 109
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 49.2 bits (112), Expect = 5e-07
Identities = 26/83 (31%), Positives = 43/83 (51%)
Frame = +3
Query: 360 EEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 539
EE E+ + + +F E + +K + T IQ Q P A+ G++
Sbjct: 19 EEEEEIEELNSQIEALSETVDHFAELPLTQPTKSALKNAHFITLTEIQKQCIPSALKGRD 78
Query: 540 LVGVAQTGSGKTLAYILPAIVHI 608
++G A+TGSGKTLA+I+P I ++
Sbjct: 79 ILGAAKTGSGKTLAFIVPLIENL 101
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 46.8 bits (106), Expect = 3e-06
Identities = 24/84 (28%), Positives = 46/84 (54%)
Frame = +3
Query: 360 EEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 539
+E N E+T S E N + FEE N + + +G+ GY+ P+ +Q++ G++
Sbjct: 3 DEIMENVELTTS--EDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRD 60
Query: 540 LVGVAQTGSGKTLAYILPAIVHIN 611
++ AQ+G+GKT + + + I+
Sbjct: 61 VIAQAQSGTGKTATFSIGILQSID 84
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 46.4 bits (105), Expect = 3e-06
Identities = 20/71 (28%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Frame = +3
Query: 417 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG--KNLVGVAQTGSGKTLAYIL 590
++ FEE + +G+ +M +++P+ IQ + P+ +S +N++G +Q+G+GKT A+ L
Sbjct: 113 VKSFEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFAL 172
Query: 591 PAIVHINNQPP 623
+ ++ P
Sbjct: 173 TMLSRVDASVP 183
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 44.8 bits (101), Expect = 1e-05
Identities = 33/118 (27%), Positives = 58/118 (49%), Gaps = 3/118 (2%)
Frame = +3
Query: 279 DSVSLQPFNKNFYD--PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDY 452
D++ L N F + P P++ ++ +++ + V+G +NP+ EE FP+
Sbjct: 2 DALKLLTTNVKFKNKVPQPSIKEKEAKKLQGITKG-KAKVTG---NNPVDPIEE--FPEG 55
Query: 453 VQ-QGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPP 623
+ + +K E T IQ P S ++L+ A TGSGKT+AY+ P + + P
Sbjct: 56 ILCENLKKQNITECTTIQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQLHVP 113
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 44.8 bits (101), Expect = 1e-05
Identities = 20/43 (46%), Positives = 29/43 (67%)
Frame = +3
Query: 477 GYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 605
G+ +P PIQ+ P A G +++G A TGSGKTLA+ +P + H
Sbjct: 141 GFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEH 183
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 43.2 bits (97), Expect = 3e-05
Identities = 22/65 (33%), Positives = 33/65 (50%)
Frame = +3
Query: 426 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 605
F + ++ +K + EPT IQ + G+N +G A+TGSGKT A+ LP I
Sbjct: 9 FSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIEK 68
Query: 606 INNQP 620
+ P
Sbjct: 69 WSKDP 73
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 36.3 bits (80), Expect = 0.004
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +3
Query: 474 MGYKEPTPIQAQGWPIAMS--GKNLVGVAQTGSGKTLAYILPAIVHINNQP 620
M PT IQ+ P ++ K+ AQTGSGKTLAY+LP + + P
Sbjct: 157 MNISAPTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLP 207
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 35.9 bits (79), Expect = 0.005
Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Frame = +3
Query: 393 SGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGW-PIAMSGKNLVGVAQTGSG 569
S ++ P + E A+ + + G+++ TP+Q + + + +N V A+TG+G
Sbjct: 29 STMKSQQPTLFSEVASLSSTFKNSLSRAGFEKMTPVQQRVLNEVFPNEENAVVQAKTGTG 88
Query: 570 KTLAYILPAIVHINNQPP 623
KTLA++L A + P
Sbjct: 89 KTLAFLLVAFKDVLKGKP 106
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 35.1 bits (77), Expect = 0.008
Identities = 15/65 (23%), Positives = 35/65 (53%)
Frame = +3
Query: 417 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPA 596
I F++ N + +G+ G++ P+ IQ + + ++++ AQ+G+GKT + +
Sbjct: 18 IDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISV 77
Query: 597 IVHIN 611
+ I+
Sbjct: 78 LQKID 82
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 33.1 bits (72), Expect = 0.034
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +3
Query: 537 NLVGVAQTGSGKTLAYILPAIVHINNQPP 623
NL+ V TG GK+L++++PA++ Q P
Sbjct: 1208 NLITVLPTGGGKSLSFLIPALIEKKRQTP 1236
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 33.1 bits (72), Expect = 0.034
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +3
Query: 537 NLVGVAQTGSGKTLAYILPAIVHINNQPP 623
NL+ V TG GK+L++++PA++ Q P
Sbjct: 1208 NLITVLPTGGGKSLSFLIPALIEKKRQTP 1236
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 30.3 bits (65), Expect = 0.24
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +3
Query: 525 MSGKNLVGVAQTGSGKTLAYILPAIV 602
+SGK++ + TG GK+L Y LPA++
Sbjct: 532 LSGKDVFILMPTGGGKSLCYQLPAVI 557
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 29.5 bits (63), Expect = 0.42
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +3
Query: 516 PIAMSGKNLVGVAQTGSGKTLAYILPAI 599
P+ G ++ A TGSGKTL+Y++P +
Sbjct: 168 PMYSYGGDVCVSAATGSGKTLSYVIPIV 195
>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 502
Score = 27.5 bits (58), Expect = 1.7
Identities = 13/56 (23%), Positives = 31/56 (55%)
Frame = +1
Query: 214 DLEDLVGKKNSLEVRTCVAQIGILFHSNLSTKTFMIHILQFSKDHHMKSKSTEIIT 381
+L++++ K N + + +A + FH + F+ HI +F K+++ ++ I+T
Sbjct: 358 ELKEILNKYNGVHTQE-LAGMRRRFHLMTAPPYFIFHIKRFMKNNYFTERNQTIVT 412
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 27.5 bits (58), Expect = 1.7
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +3
Query: 474 MGYKEPTPIQAQGWPIAM-SGKNLVGVAQTGSGKTLAYILPAIVHINN 614
+ Y+ IQ+ +PIA + +N++ A TG+GKT +L + I+N
Sbjct: 273 LSYQTLNRIQSLVYPIAYKTNENMLICAPTGAGKTDVALLAMLQTISN 320
>SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 652
Score = 25.4 bits (53), Expect = 6.8
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Frame = +3
Query: 279 DSVSLQPFNKN----FYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQ 422
D V L PF K FYDP P LK + +E+ + + V +H P+Q
Sbjct: 112 DVVEL-PFTKGGYGGFYDPRPGCLKFTTHEINVSYTDTSIPV----IHIPVQ 158
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 6.8
Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
Frame = -3
Query: 477 PLSLHLVAHNQENL--LLQSIE 418
PL LH+V+HN+++L LQ IE
Sbjct: 217 PLYLHIVSHNRKDLTVALQEIE 238
>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
membrane transporter Hmt1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 830
Score = 25.0 bits (52), Expect = 9.0
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +1
Query: 298 LSTKTFMIHILQFSKDHHMKSKSTEIIT 381
+STK H+L S D H+ ++ E++T
Sbjct: 340 ISTKALR-HVLNLSYDFHLNKRAGEVLT 366
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,401,751
Number of Sequences: 5004
Number of extensions: 47162
Number of successful extensions: 144
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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