Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18k02
         (626 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       77   1e-16
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    23   3.2  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   7.4  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   7.4  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   7.4  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 77.4 bits (182), Expect = 1e-16
 Identities = 36/76 (47%), Positives = 49/76 (64%)
 Frame = +3

Query: 372 NNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGV 551
           +N +V VSG  V  PI+ FE A   + V   +K  GYK+PTP+Q    PI M+G++L+  
Sbjct: 180 DNIQVNVSGDNVPQPIESFEAAGLRNIVLDNIKKSGYKKPTPVQKHALPIIMNGRDLMAC 239

Query: 552 AQTGSGKTLAYILPAI 599
           AQTGSGKT A+ +P I
Sbjct: 240 AQTGSGKTAAFAVPII 255


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/37 (21%), Positives = 18/37 (48%)
 Frame = +2

Query: 488 TDAYSSSRLADSYVWKEFSWRSSNGFRQNVGLHLASH 598
           +D+ +  +L + Y WK   +   NG+ +   +   S+
Sbjct: 16  SDSQAQEKLKNIYSWKALEFAFPNGYAKLAAIKSGSY 52


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 6/16 (37%), Positives = 8/16 (50%)
 Frame = -1

Query: 278 PIWATHVLTSREFFFP 231
           P+W  H+   R   FP
Sbjct: 634 PVWGRHIYDGRAMGFP 649


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 112 TGIIAVETVVPNLEEATNSA 171
           T + A   V P +EE TN+A
Sbjct: 412 TALGAAALVAPGMEEPTNTA 431


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 6/16 (37%), Positives = 8/16 (50%)
 Frame = -1

Query: 278 PIWATHVLTSREFFFP 231
           P+W  H+   R   FP
Sbjct: 634 PVWGRHIYDGRAMGFP 649


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,426
Number of Sequences: 438
Number of extensions: 3223
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)