Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18j17
         (644 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    29   0.57 
SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces po...    27   3.1  
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac...    26   5.3  
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang...    25   7.1  

>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 29.1 bits (62), Expect = 0.57
 Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
 Frame = +1

Query: 112  FYFSTYSMEEERLQRIKVKLIP*PIFNKNRSFFVIII*ISAGAFLASVTGISALIGFSAT 291
            FY STY      +Q++  +L     FN ++++  ++  +   ++L  V+ I +L+  +A 
Sbjct: 1549 FYESTY------IQQLLPELAA-SFFNSSKTYMHLVTLLKERSYLYKVSNIPSLLESAAK 1601

Query: 292  LST----AKKSDPKYFSKGLH 342
            LST    +KKS  KYF    H
Sbjct: 1602 LSTTLEDSKKSLLKYFELQRH 1622


>SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 434

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = -1

Query: 578 YVKKSFKPLNSVLD*GGLFFGNVGN-KLPIFTLKSFKSLAP 459
           YV  +  PL S+   GG  FG++   K+P+ T+ + K+L+P
Sbjct: 68  YVLYTTLPL-SIFQIGGHVFGSLATTKIPVSTVHTVKALSP 107


>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
           Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 585

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
 Frame = +3

Query: 348 C*AWGRR--CHTCIKSLRMGYTVCCCRY 425
           C A+G +   +TC+K L    + C CRY
Sbjct: 145 CSAYGMKENIYTCLKDLYCSVSCCDCRY 172


>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
           factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 614 SFTDFFPYSSDTYVKKSFKPLN 549
           SF+ FF  SS TY+ K  + LN
Sbjct: 28  SFSSFFKKSSQTYLSKRSEKLN 49


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,575,188
Number of Sequences: 5004
Number of extensions: 51932
Number of successful extensions: 101
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)