Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18j17
         (644 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_06_0024 - 9733994-9734093,9734814-9734870,9734954-9735040,973...    29   2.4  
05_03_0676 - 16853937-16854042,16854605-16854700,16854920-168550...    29   4.2  
07_01_0595 - 4432642-4432926,4433062-4433769,4433964-4434164,443...    28   7.3  
02_04_0632 + 24614659-24615528,24615636-24616133                       28   7.3  
04_04_0461 + 25390552-25391904                                         27   9.7  

>10_06_0024 -
           9733994-9734093,9734814-9734870,9734954-9735040,
           9736438-9736982,9737086-9737271
          Length = 324

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 26/74 (35%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
 Frame = +1

Query: 229 SAGAFLASVTGISALIGFSATLSTAKKSDPKYFSKGLHG--GAELGDAGAILALRALGWG 402
           S  A LASVTG S L G S+ L T      + +  G H   G     A  +LA  A+   
Sbjct: 48  SLAASLASVTGFSLLSGMSSALDTL---CGQAYGAGQHRLLGVYAQRAMLVLAAAAVPIA 104

Query: 403 TLYAVAGTGFLCYG 444
            ++A AG   L +G
Sbjct: 105 LVWASAGEILLLFG 118


>05_03_0676 -
           16853937-16854042,16854605-16854700,16854920-16855089,
           16856742-16856825,16857042-16857119,16858053-16858216,
           16858345-16858429
          Length = 260

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +3

Query: 372 HTCIKSLRMGYTVCCCRYWFPLLWHLETFW 461
           +TCI S+ +G  V  C+YW  +   L++FW
Sbjct: 110 NTCIISVDIGIFVVLCKYW--VAAKLDSFW 137


>07_01_0595 -
           4432642-4432926,4433062-4433769,4433964-4434164,
           4434296-4435288
          Length = 728

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 641 IKNDFYIYFSFTDFFPYSSDTYVKKSFKPL 552
           +  D YI FSF+ F+P+   T V     PL
Sbjct: 279 VSRDEYIGFSFSPFYPFVPGTTVHLRMNPL 308


>02_04_0632 + 24614659-24615528,24615636-24616133
          Length = 455

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = +3

Query: 408 VCCCRYWFPLLWHLET 455
           +CCC  +FP++W + +
Sbjct: 337 ICCCAVFFPIIWSIRS 352


>04_04_0461 + 25390552-25391904
          Length = 450

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = +3

Query: 408 VCCCRYWFPLLWHL 449
           +CCC  +FP++W +
Sbjct: 331 ICCCAVFFPIIWSI 344


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,282,019
Number of Sequences: 37544
Number of extensions: 300405
Number of successful extensions: 653
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)