Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18j16
         (597 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A11.11c |||pyridoxal reductase |Schizosaccharomyces pombe|c...    32   0.055
SPBC16E9.07 |mug100||sequence orphan|Schizosaccharomyces pombe|c...    28   0.90 
SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25 |Sch...    27   2.1  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    27   2.7  
SPBC30B4.07c |tfb4||transcription factor TFIIH complex subunit T...    26   4.8  
SPCC550.10 |meu8||betaine aldehyde dehydrogenase |Schizosaccharo...    25   8.4  

>SPAC3A11.11c |||pyridoxal reductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 334

 Score = 32.3 bits (70), Expect = 0.055
 Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
 Frame = +1

Query: 142 EKHKNTEMSRCLTFSILFVLFTTFKTVYSINCYQCSGTDSNNPFE----C-NEFLD-GDV 303
           E H+      C+T SI  V   T K V +I+ YQC+  D + P E    C  EF+D GD+
Sbjct: 89  ETHRVHGTRECITKSIKTVR-ETLKKVKTIDLYQCAAIDPDTPIEETMACLKEFVDSGDI 147


>SPBC16E9.07 |mug100||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 313

 Score = 28.3 bits (60), Expect = 0.90
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +1

Query: 187 ILFVLFT-TFKTVYSINCYQCSGTDSNNPFECNE 285
           +L +LFT TFK+ +S+N Y  + +  +    CNE
Sbjct: 189 LLVLLFTLTFKSKHSLNAYSLTASQFSGHTVCNE 222


>SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 423

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -3

Query: 433 KCTFPTPVSKFCCDSCAVKLQTFRRVLCSIE 341
           K  FP+ +S+ CC   A  L    R  CS+E
Sbjct: 267 KLEFPSYISEDCCSLIAAMLNVNPRKRCSLE 297


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 4924

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +1

Query: 223 YSINCYQCSGTDSNNPFECNEFLDGDVDLVPIDCATIHDAQYC 351
           YS NC +C        F   EF +  ++  P+D A I+D+  C
Sbjct: 879 YSKNCLECI----QKHFTTKEFDEQFLNSGPLDAAVIYDSSNC 917


>SPBC30B4.07c |tfb4||transcription factor TFIIH complex subunit Tfb4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +1

Query: 133 INQEKHKNTEMSRCLTFSILFVLFTTFKTVYSINCYQCSGTDSNNPFE-CN 282
           INQ ++KNT  SR L FS+   +    + + ++NC  C+    N P   CN
Sbjct: 145 INQVQNKNTLRSRILIFSLTGDV--ALQYIPTMNCIFCA-QKKNIPINVCN 192


>SPCC550.10 |meu8||betaine aldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 500

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -3

Query: 439 TTKCTFPTPVSKFCCDSCAVKLQTFRRV 356
           T  C  PTP + F  DSCA   + +  V
Sbjct: 109 TINCGKPTPYALFDIDSCADMFEYYAEV 136


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,479,909
Number of Sequences: 5004
Number of extensions: 51781
Number of successful extensions: 101
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)