Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18j16
         (597 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81076-12|CAB03061.2|  161|Caenorhabditis elegans Hypothetical p...    31   0.82 
U23525-7|AAC46569.1|  557|Caenorhabditis elegans Yeast smf (diva...    29   3.3  
U23525-6|AAU05559.1|  471|Caenorhabditis elegans Yeast smf (diva...    29   3.3  
AL022716-4|CAA18773.1|  703|Caenorhabditis elegans Hypothetical ...    28   5.8  
AF040646-5|AAK31539.1|  492|Caenorhabditis elegans Hypothetical ...    27   7.7  
AF036695-3|ABD63231.1|  193|Caenorhabditis elegans Hypothetical ...    27   7.7  

>Z81076-12|CAB03061.2|  161|Caenorhabditis elegans Hypothetical
           protein F35C5.11 protein.
          Length = 161

 Score = 30.7 bits (66), Expect = 0.82
 Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
 Frame = +1

Query: 181 FSILFVLFTTFKTVYSINCYQCSGTDSNNPFECNEF--LDGDVDLVPIDCATIHDAQYC 351
           F  L +L     + Y+I C+QC G +    F  N    L+  VD +  DC     +  C
Sbjct: 5   FQFLIILAFITSSAYAIKCHQCGGAEKIPKFAKNALAKLNISVDSLYGDCKKTSGSDMC 63


>U23525-7|AAC46569.1|  557|Caenorhabditis elegans Yeast smf
           (divalent cation transporter)homolog protein 1, isoform
           a protein.
          Length = 557

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 18/77 (23%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
 Frame = +1

Query: 112 NDFLFTVINQEKHKNTEMSRCLTFSILFVLFTTFKTVYS-INCYQCSGTDSNNPFECNEF 288
           +D++F+ +  E +    ++  +TF+  +VLF  +  +Y  ++C     T S   F  N+ 
Sbjct: 479 SDYVFSRLGSEWYIIMVLAP-ITFA--YVLFVLYLALYCLVSCEIIPDTVSIRGFSFNKS 535

Query: 289 LDGDVDLVPIDCATIHD 339
            + D   + +D + +HD
Sbjct: 536 YENDAPWLAVDSSAVHD 552


>U23525-6|AAU05559.1|  471|Caenorhabditis elegans Yeast smf
           (divalent cation transporter)homolog protein 1, isoform
           b protein.
          Length = 471

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 18/77 (23%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
 Frame = +1

Query: 112 NDFLFTVINQEKHKNTEMSRCLTFSILFVLFTTFKTVYS-INCYQCSGTDSNNPFECNEF 288
           +D++F+ +  E +    ++  +TF+  +VLF  +  +Y  ++C     T S   F  N+ 
Sbjct: 393 SDYVFSRLGSEWYIIMVLAP-ITFA--YVLFVLYLALYCLVSCEIIPDTVSIRGFSFNKS 449

Query: 289 LDGDVDLVPIDCATIHD 339
            + D   + +D + +HD
Sbjct: 450 YENDAPWLAVDSSAVHD 466


>AL022716-4|CAA18773.1|  703|Caenorhabditis elegans Hypothetical
           protein C24F3.4 protein.
          Length = 703

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +1

Query: 91  QNPLRLCNDFLFTVINQEKHKNTEMSRC 174
           ++P  LCN  LFT     +H + E  +C
Sbjct: 410 EDPAELCNQVLFTCYMASEHSSDETRQC 437


>AF040646-5|AAK31539.1|  492|Caenorhabditis elegans Hypothetical
           protein H17B01.1a protein.
          Length = 492

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
 Frame = +1

Query: 112 NDFLFTVINQEKHKNT---EMSRCLTFSILFVLFTTFKTVYSINCYQCSG 252
           ND   +V  QE    T   ++++CL FS   +   +F+  Y I C    G
Sbjct: 4   NDHDVSVPLQEVQSRTVEGKLTKCLAFSAFVITLASFQFGYHIGCVNAPG 53


>AF036695-3|ABD63231.1|  193|Caenorhabditis elegans Hypothetical
           protein F16B3.3 protein.
          Length = 193

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 163 MSRCLTFSILFVLFTTFKTVYSINCYQCS 249
           +S  +    LF  F T+ T ++I CY C+
Sbjct: 7   ISPLIRLVFLFFTFATWHTAHAIKCYSCA 35


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,910,493
Number of Sequences: 27780
Number of extensions: 305410
Number of successful extensions: 722
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)