Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc18j15
(635 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces po... 29 0.56
SPCC63.05 |||TAP42 family protein |Schizosaccharomyces pombe|chr... 28 0.98
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 27 2.3
SPAC12B10.03 |||WD repeat protein, human WDR20 family|Schizosacc... 26 4.0
SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr... 26 5.2
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 26 5.2
SPAC11D3.10 |||nifs homolog|Schizosaccharomyces pombe|chr 1|||Ma... 26 5.2
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca... 25 6.9
SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2 |Sch... 25 9.1
SPCC1322.02 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 25 9.1
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar... 25 9.1
>SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 516
Score = 29.1 bits (62), Expect = 0.56
Identities = 13/56 (23%), Positives = 27/56 (48%)
Frame = +3
Query: 285 RLKKELDELEKDGVICRVEEPTEWISSLVITTKKDGSLRLCIDPRKLNQAILRSHY 452
+ K+E+++ ++ R E TEW + +K+G L + +K+ + L Y
Sbjct: 457 KAKQEIEDQQRQASAAREESHTEWKPRFFVPDEKEGRPTLTEEGKKVLEQSLSDEY 512
>SPCC63.05 |||TAP42 family protein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 323
Score = 28.3 bits (60), Expect = 0.98
Identities = 28/94 (29%), Positives = 39/94 (41%), Gaps = 8/94 (8%)
Frame = +3
Query: 216 LKLKPDCKPSVDACRRI----PFQIKNRLKKELDELEKDGVICRVEEPTEWISSLVI--- 374
LK D KP +A R ++++ L+KEL L KD +E W++ L I
Sbjct: 105 LKPMQDEKPKTEADTRTLKIARYRMRQNLEKELKALSKDSETNEEQERKFWLTKLQIAVE 164
Query: 375 -TTKKDGSLRLCIDPRKLNQAILRSHYQFPTIDE 473
T + + ID K QA L P DE
Sbjct: 165 DTLDSLPHIEMEIDLLKRAQAELMKSEDSPEKDE 198
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting protein
3 homolog Bud6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1385
Score = 27.1 bits (57), Expect = 2.3
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 216 LKLKPDCKPSVDACRRIPFQIKNRLKKELDELEKD 320
L LKPD + + A R K RL + +DE K+
Sbjct: 1163 LNLKPDSEARLQAIERSELLQKKRLLQRVDEFSKE 1197
>SPAC12B10.03 |||WD repeat protein, human WDR20
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 543
Score = 26.2 bits (55), Expect = 4.0
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +3
Query: 99 LHMVSEKRLYKV-NFVPSQILDNYSELFVGLGCL 197
L +VSE+ K+ +FV +LD + F GL C+
Sbjct: 337 LALVSERGTLKLFDFVKEHVLDVFHSYFAGLTCV 370
>SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 512
Score = 25.8 bits (54), Expect = 5.2
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = -2
Query: 616 GSRVNLYLPKGVMNVQSFDVVSVRRIIQ*PLLASKVEKYFAPVRSDFISSIV 461
G VN+ +P G+ V +F VS +R I PL ++ + F D S +V
Sbjct: 52 GDPVNIAIPNGLEFVVAFYAVSWQRAICGPLNSNYKQSEFEFYIDDLKSKLV 103
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 25.8 bits (54), Expect = 5.2
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = -2
Query: 259 LHASTEGLQSGLSFNSHSKSFRHPSPTKSSL*LSNI*LGT 140
LH L S +S KS +HPSP K L S+ LG+
Sbjct: 271 LHVPAVPLTSASHSSSDGKSRKHPSPYKPYLNSSHDTLGS 310
>SPAC11D3.10 |||nifs homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 434
Score = 25.8 bits (54), Expect = 5.2
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +3
Query: 177 FVGLGCLKDFECELKLKPDCKPSVDACR 260
FVG G ++DF+ +LKLK + K A R
Sbjct: 243 FVGGGAVEDFKEDLKLKLNAKYHQSALR 270
>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
catalytic subunit Arm1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 811
Score = 25.4 bits (53), Expect = 6.9
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -1
Query: 626 NTKWKSCKSISSKRSNECTEL 564
NT WK CK++ SN+ ++L
Sbjct: 224 NTDWKVCKALLDSASNDDSKL 244
>SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 681
Score = 25.0 bits (52), Expect = 9.1
Identities = 7/24 (29%), Positives = 19/24 (79%)
Frame = -3
Query: 450 NETLKLPD*VYEGLYITLMNHLFW 379
++++ + + V +GL++T+++ LFW
Sbjct: 445 DQSIHMENYVSKGLHVTILSRLFW 468
>SPCC1322.02 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 351
Score = 25.0 bits (52), Expect = 9.1
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +1
Query: 544 VSRRPHQSSVHSLLLLEDIDLHDF 615
V P Q ++HS L ++ ++HDF
Sbjct: 41 VHAAPRQKTLHSFLKKDNANIHDF 64
>SPAC2F7.03c |pom1||DYRK family protein kinase
Pom1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1087
Score = 25.0 bits (52), Expect = 9.1
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +1
Query: 544 VSRRPHQSSVHSLLLLEDIDLHDF 615
VSRRP S+H +L +D+ F
Sbjct: 948 VSRRPFSKSLHQVLQCKDVSFLSF 971
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,618,071
Number of Sequences: 5004
Number of extensions: 53086
Number of successful extensions: 140
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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