Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18j15
         (635 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   2.5  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    22   4.3  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   7.6  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -1

Query: 617 WKSCKSISSKRSNECTEL 564
           W+ C +ISS+   EC+ +
Sbjct: 104 WRVCVAISSRMEYECSRI 121


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 9/46 (19%), Positives = 21/46 (45%)
 Frame = -2

Query: 475 ISSIVGNW**DLKIA*LSLRGSIHNLNEPSFLVVMTKELIHSVGSS 338
           I ++   W        L+  G++H++  P    ++    ++ +GSS
Sbjct: 348 IDTVAAEWPATTNYLYLTYNGTVHDVEFPGXYTMVIGSGVYRIGSS 393


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 13/58 (22%), Positives = 26/58 (44%)
 Frame = +3

Query: 309 LEKDGVICRVEEPTEWISSLVITTKKDGSLRLCIDPRKLNQAILRSHYQFPTIDEIKS 482
           +E + ++CR +   + + S +    +  SL+L  +PR+      +    FP     KS
Sbjct: 19  VELEALLCRRDAEIQELRSHLDKFLQCASLKLAFEPRRNPGPGSKGPRDFPRSHRFKS 76


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,021
Number of Sequences: 438
Number of extensions: 3378
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)