Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18j07
         (350 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|...    32   0.023
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|...    29   0.16 
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||...    27   0.64 
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    26   2.0  
SPCC126.14 |prp18||U5 snRNP-associated protein Prp18|Schizosacch...    26   2.0  
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi...    24   6.0  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    24   6.0  

>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 32.3 bits (70), Expect = 0.023
 Identities = 21/73 (28%), Positives = 35/73 (47%)
 Frame = +1

Query: 1   DKDFSLKLKRVINMFLNDEIENDKIYKLVETVDSSNKLSRRQVDFLIHALLNNVSVTFTL 180
           D D SL +  V N+ +ND+I N+          +  +LS    D        +   TFT+
Sbjct: 196 DNDDSLDILNVPNL-VNDDIANNNAAPPPPLAQAQEQLSTENEDEFDIDDTTDKMTTFTM 254

Query: 181 HRFVDDNVLTQDE 219
           ++F D +VL +D+
Sbjct: 255 NKFADLSVLEEDD 267



 Score = 26.6 bits (56), Expect = 1.1
 Identities = 16/56 (28%), Positives = 30/56 (53%)
 Frame = +1

Query: 1   DKDFSLKLKRVINMFLNDEIENDKIYKLVETVDSSNKLSRRQVDFLIHALLNNVSV 168
           D D +  L R+  +F+ND  +  + +K     + S    R+ V  L+HAL N++++
Sbjct: 514 DSD-NASLTRIDKIFINDVYQRMQQFKHSAIEEISLPPCRKYVRRLVHALANDLNL 568


>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 461

 Score = 29.5 bits (63), Expect = 0.16
 Identities = 18/69 (26%), Positives = 32/69 (46%)
 Frame = +1

Query: 64  NDKIYKLVETVDSSNKLSRRQVDFLIHALLNNVSVTFTLHRFVDDNVLTQDELSFLANFL 243
           +D++    +T D  N+ ++  + F I ALL    +    ++F+DDN  T    S +  F 
Sbjct: 308 SDRLDAASQTTDFVNQWTKESLFFQICALLTTALIL--ANKFLDDNTFTNQSWSQVTGFR 365

Query: 244 VTKLDEAYQ 270
              L+   Q
Sbjct: 366 TALLNSFEQ 374


>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1101

 Score = 27.5 bits (58), Expect = 0.64
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -1

Query: 257 SSFVTRKFAKKLSSSCVKTLSSTNLCNVNVTLT 159
           SSF+ RKF   LSSS ++ L++    N++   T
Sbjct: 858 SSFINRKFGVLLSSSFIQQLNTVENLNLSFNST 890


>SPCC63.04 |mok14||alpha-1,3-glucan synthase
           Mok14|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1369

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -1

Query: 275 GNWYASSSFVTRKFAKKLSSSCVKTLSST 189
           G WY+  S  T    K+L  SC   L ST
Sbjct: 665 GWWYSVESSSTAYLLKQLEKSCTLALKST 693


>SPCC126.14 |prp18||U5 snRNP-associated protein
           Prp18|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 343

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 6/39 (15%)
 Frame = +1

Query: 52  DEIENDKIYKLVETVD------SSNKLSRRQVDFLIHAL 150
           +EIEN+ + K VET+D      +  K+S++ V FL H +
Sbjct: 164 EEIENELLTKGVETIDFEHATTTKPKVSKQVVAFLQHGI 202


>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
           Air1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 313

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -2

Query: 82  VCRFCHFQFHRLKTC*LL 29
           VCR CH   H   TC L+
Sbjct: 150 VCRTCHTDTHTSSTCPLI 167


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -1

Query: 275  GNWYASSSFVTRKFAKKLSSSCVKTLSST 189
            G WY+  S  T    K+   +C + LSS+
Sbjct: 1555 GWWYSVESSATPHLLKQFEQACQQALSSS 1583


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,227,451
Number of Sequences: 5004
Number of extensions: 20611
Number of successful extensions: 82
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)