Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18j07
         (350 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_06_0105 - 10790092-10790323,10791092-10791234,10791322-107914...    36   0.009
03_02_0737 + 10820728-10821096,10821320-10821532,10821631-108217...    27   4.1  
11_06_0350 + 22573760-22575262                                         26   9.6  
07_03_0761 - 21314806-21315144,21315267-21315417,21315509-213157...    26   9.6  
03_02_0940 + 12583131-12583280,12583805-12583996,12584185-125843...    26   9.6  
01_07_0036 + 40647046-40647100,40647120-40647571,40648135-406482...    26   9.6  

>10_06_0105 - 10790092-10790323,10791092-10791234,10791322-10791429,
            10791796-10791903,10793133-10797686,10798347-10798461,
            10799597-10799724,10799843-10800043,10800158-10800227,
            10801233-10801314,10801433-10801556,10801761-10801778
          Length = 1960

 Score = 35.9 bits (79), Expect = 0.009
 Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
 Frame = +1

Query: 55   EIENDKIYKLVETVDSSNKLSRRQVDFL-IHALLNNVSVTFTLHRFVDDNVLTQDELSFL 231
            ++  DK   +VE++DSS ++ + Q D L +  LL N      L   VDD   T+DE+  L
Sbjct: 1404 QVGTDKSRDIVESIDSSERVLKYQDDILQLKVLLTN------LEEQVDDLRSTKDEVEIL 1457

Query: 232  ANFLVTKLDE 261
               L +KL+E
Sbjct: 1458 NMVLKSKLEE 1467


>03_02_0737 +
           10820728-10821096,10821320-10821532,10821631-10821732,
           10821755-10821793,10821830-10821967,10822182-10822486,
           10822784-10822937,10823279-10823404
          Length = 481

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +1

Query: 196 DNVLTQDELSFLANFLVTKLDEA 264
           D+VL  D   F+ NFL T LDEA
Sbjct: 458 DSVLNGDLDDFILNFLSTSLDEA 480


>11_06_0350 + 22573760-22575262
          Length = 500

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -1

Query: 281 YAGNWYASSSFVTRKFAKKLSS 216
           Y  N YA +S ++ KF+KK+SS
Sbjct: 474 YENNRYALASEMSEKFSKKISS 495


>07_03_0761 -
           21314806-21315144,21315267-21315417,21315509-21315746,
           21315873-21316083,21316585-21316715,21317112-21317249,
           21320183-21321071
          Length = 698

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
 Frame = -1

Query: 218 SSCVKTLSST--NLCNVNVTLTLFNNACI 138
           ++CV T   T   LC  N   TLFN+ CI
Sbjct: 116 AACVATAFDTAQQLCAFNKRATLFNDPCI 144


>03_02_0940 +
           12583131-12583280,12583805-12583996,12584185-12584350,
           12584774-12584801,12585525-12585594,12586399-12586435,
           12587760-12588148
          Length = 343

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -1

Query: 254 SFVTRKFAKKLSSSCVKTLSSTNLCNVNVTLTLFNNA 144
           S +   FA  L +SC +    TNL  ++ T   F+NA
Sbjct: 235 SNINAPFAASLRASCPQAGGDTNLAPLDSTPNAFDNA 271


>01_07_0036 +
           40647046-40647100,40647120-40647571,40648135-40648257,
           40648407-40648461,40648613-40648722,40649352-40649531,
           40650003-40650101,40651182-40651280,40652195-40652289,
           40652290-40652378,40652739-40652901,40653299-40653404,
           40655647-40655829,40656059-40656286,40656373-40656486
          Length = 716

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 269 NCRRINSKINKNENKFVQYTISVFK 343
           NC   N+ +N+   K +QY + VFK
Sbjct: 521 NCSCNNNCVNRTSQKGLQYRLEVFK 545


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,859,032
Number of Sequences: 37544
Number of extensions: 103412
Number of successful extensions: 300
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 300
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 518263348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)