Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18j07
         (350 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    21   5.6  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    21   5.6  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    21   5.6  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   5.6  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    21   5.6  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    20   7.4  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    20   9.8  

>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 20.6 bits (41), Expect = 5.6
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -1

Query: 230 KKLSSSCVKTLSSTNLCNVNVTLTLFNNACIK 135
           K +SS   KT+ + N    N     +NN C K
Sbjct: 80  KIISSLSNKTIHNNNNYKYNYNNNNYNNNCKK 111


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 20.6 bits (41), Expect = 5.6
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -1

Query: 230 KKLSSSCVKTLSSTNLCNVNVTLTLFNNACIK 135
           K +SS   KT+ + N    N     +NN C K
Sbjct: 80  KIISSLSNKTIHNNNNYKYNYNNNNYNNNCKK 111


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 20.6 bits (41), Expect = 5.6
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -1

Query: 230 KKLSSSCVKTLSSTNLCNVNVTLTLFNNACIK 135
           K +SS   KT+ + N    N     +NN C K
Sbjct: 80  KIISSLSNKTIHNNNNYKYNYNNNNYNNNCKK 111


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 20.6 bits (41), Expect = 5.6
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +1

Query: 10  FSLKLKRVINMFLND 54
           F +K+KR  N+F+N+
Sbjct: 267 FEMKIKRKHNVFVNN 281


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 20.6 bits (41), Expect = 5.6
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = +2

Query: 251 NWTKHTNCRRINSKINKNENKFVQYTISVFKK 346
           N T H N    N+  N N N +     + +KK
Sbjct: 320 NKTIHNNNNYNNNNYNNNYNNYNNNNYNNYKK 351


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 20.2 bits (40), Expect = 7.4
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +2

Query: 281 INSKINKNENKFVQYTISV 337
           IN+  N N NK+  Y I V
Sbjct: 134 INNTNNNNTNKYKDYYIWV 152


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 19.8 bits (39), Expect = 9.8
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = +2

Query: 254 WTKHTNCRRINSKINKNENKFVQYTISV 337
           W +H   +R N  +     K +Q  ISV
Sbjct: 331 WNEHQPLQRQNMDMVAQNEKTLQMIISV 358


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,374
Number of Sequences: 438
Number of extensions: 1212
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8060325
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)