Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc18j03
(507 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chlor... 23 2.4
DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chlor... 22 3.2
EF625896-1|ABR45903.1| 683|Apis mellifera hexamerin protein. 22 4.2
AY601637-1|AAT11850.1| 683|Apis mellifera hexamerin 70b protein. 22 4.2
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 21 5.6
AY739659-1|AAU85298.1| 288|Apis mellifera hyperpolarization-act... 21 5.6
AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 21 5.6
AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-act... 21 5.6
DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride... 21 7.3
DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride... 21 7.3
DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride... 21 7.3
DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride... 21 7.3
AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex det... 21 9.7
>DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chloride
channel protein.
Length = 383
Score = 22.6 bits (46), Expect = 2.4
Identities = 6/11 (54%), Positives = 9/11 (81%)
Frame = +2
Query: 455 IDMPNHVIWLY 487
+ +PNH +WLY
Sbjct: 105 MSIPNHYLWLY 115
>DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chloride
channel protein.
Length = 428
Score = 22.2 bits (45), Expect = 3.2
Identities = 6/9 (66%), Positives = 8/9 (88%)
Frame = +2
Query: 461 MPNHVIWLY 487
+PNH +WLY
Sbjct: 138 IPNHYLWLY 146
>EF625896-1|ABR45903.1| 683|Apis mellifera hexamerin protein.
Length = 683
Score = 21.8 bits (44), Expect = 4.2
Identities = 5/10 (50%), Positives = 7/10 (70%)
Frame = -3
Query: 478 YNMIWHIDNP 449
Y + WH+D P
Sbjct: 39 YELFWHVDQP 48
>AY601637-1|AAT11850.1| 683|Apis mellifera hexamerin 70b protein.
Length = 683
Score = 21.8 bits (44), Expect = 4.2
Identities = 5/10 (50%), Positives = 7/10 (70%)
Frame = -3
Query: 478 YNMIWHIDNP 449
Y + WH+D P
Sbjct: 39 YELFWHVDQP 48
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 21.4 bits (43), Expect = 5.6
Identities = 6/16 (37%), Positives = 11/16 (68%)
Frame = +3
Query: 459 ICQIMLYGYIVCFXXK 506
I ++L+G ++CF K
Sbjct: 14 IINVLLHGQVICFVCK 29
>AY739659-1|AAU85298.1| 288|Apis mellifera
hyperpolarization-activated ion channelvariant T
protein.
Length = 288
Score = 21.4 bits (43), Expect = 5.6
Identities = 7/17 (41%), Positives = 11/17 (64%)
Frame = +1
Query: 166 YLQYWFLLSFLMSVALN 216
YL+ WF L + S+ L+
Sbjct: 164 YLRTWFFLDLISSIPLD 180
>AY739658-1|AAU85297.1| 664|Apis mellifera
hyperpolarization-activated ion channelvariant L
protein.
Length = 664
Score = 21.4 bits (43), Expect = 5.6
Identities = 7/17 (41%), Positives = 11/17 (64%)
Frame = +1
Query: 166 YLQYWFLLSFLMSVALN 216
YL+ WF L + S+ L+
Sbjct: 164 YLRTWFFLDLISSIPLD 180
>AY280848-1|AAQ16312.1| 632|Apis mellifera
hyperpolarization-activated ion channel protein.
Length = 632
Score = 21.4 bits (43), Expect = 5.6
Identities = 7/17 (41%), Positives = 11/17 (64%)
Frame = +1
Query: 166 YLQYWFLLSFLMSVALN 216
YL+ WF L + S+ L+
Sbjct: 164 YLRTWFFLDLISSIPLD 180
>DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride
channel variant 4 protein.
Length = 489
Score = 21.0 bits (42), Expect = 7.3
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = -3
Query: 376 LNC*QKQNLYPFDCP 332
L+C + N++PFD P
Sbjct: 184 LSCQGRLNIFPFDDP 198
>DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride
channel variant 3 protein.
Length = 475
Score = 21.0 bits (42), Expect = 7.3
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = -3
Query: 376 LNC*QKQNLYPFDCP 332
L+C + N++PFD P
Sbjct: 184 LSCQGRLNIFPFDDP 198
>DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride
channel variant 1 protein.
Length = 509
Score = 21.0 bits (42), Expect = 7.3
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = -3
Query: 376 LNC*QKQNLYPFDCP 332
L+C + N++PFD P
Sbjct: 235 LSCQGRLNIFPFDDP 249
>DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride
channel protein.
Length = 458
Score = 21.0 bits (42), Expect = 7.3
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = -3
Query: 376 LNC*QKQNLYPFDCP 332
L+C + N++PFD P
Sbjct: 184 LSCQGRLNIFPFDDP 198
>AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex
determiner protein.
Length = 425
Score = 20.6 bits (41), Expect = 9.7
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = -2
Query: 194 NDNRNQYCKYSNSLN 150
N+N N Y Y+N+ N
Sbjct: 331 NNNYNNYNNYNNNYN 345
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,403
Number of Sequences: 438
Number of extensions: 3155
Number of successful extensions: 13
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13986774
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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