Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc18i23
(622 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1048 - 23545060-23546381,23546479-23546554 29 3.0
04_03_0389 - 15302079-15302120,15302545-15302634,15302718-153029... 29 3.0
01_06_0734 + 31569017-31569358,31569832-31569906,31570009-315701... 29 3.0
01_01_0832 - 6500139-6500333,6500610-6500875,6501494-6501815,650... 29 3.0
05_06_0271 + 26836396-26836610,26836793-26836872,26837573-268376... 28 5.2
07_01_0004 + 35300-35533,35617-35732,39044-39287,39451-40578,406... 28 6.9
07_03_1752 - 29218348-29218524,29218593-29218736,29218957-292191... 27 9.1
07_01_0770 + 5912412-5912476,5913759-5913779,5914015-5914638,591... 27 9.1
07_01_0766 - 5885207-5885791,5885874-5886224,5886252-5886269,588... 27 9.1
03_06_0389 - 33567385-33567969,33568052-33568402,33568646-335688... 27 9.1
>07_03_1048 - 23545060-23546381,23546479-23546554
Length = 465
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = -2
Query: 609 FLSQPLRVSWALTGATTTAV 550
FL+ P+RV+W LT AT TA+
Sbjct: 153 FLNLPVRVAWRLTVATGTAI 172
>04_03_0389 -
15302079-15302120,15302545-15302634,15302718-15302983,
15303196-15303883
Length = 361
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/41 (36%), Positives = 18/41 (43%)
Frame = -3
Query: 431 PRCSCLRSALWSSRLKQGGPWDIPANLSQRLREHSQY*CPW 309
P LR A+ LK +P N +RLR H CPW
Sbjct: 99 PSVEVLRKAITEYSLKARVDIKMPRNEQKRLRAHCVEGCPW 139
>01_06_0734 +
31569017-31569358,31569832-31569906,31570009-31570159,
31570716-31570784,31570864-31571036,31571474-31571611,
31571747-31571872,31571951-31572049,31573175-31573298,
31573465-31573528,31573798-31573852,31573951-31574075,
31574228-31574301,31574436-31574485,31574722-31574808,
31574897-31574947,31575025-31575108,31575400-31575498
Length = 661
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 428 VDHLDEGFHIGVIFTGKVRKDTVRVG 505
V ++ F++G I TG+VR VRVG
Sbjct: 271 VSMMERDFYLGRILTGRVRSGVVRVG 296
>01_01_0832 -
6500139-6500333,6500610-6500875,6501494-6501815,
6501915-6502156,6502229-6502457,6503020-6503184,
6503279-6503605,6504150-6504191,6504333-6504400,
6504748-6504934,6506249-6506311,6506748-6506790,
6506919-6507019,6507110-6507184,6507359-6507445,
6507593-6507682,6507906-6507992,6508585-6508783,
6509113-6509177,6509502-6509606,6509726-6509871,
6510100-6510224,6510335-6510437,6510482-6510596,
6510734-6510869,6511298-6511387,6511484-6511578,
6511698-6511763,6511868-6511936,6512034-6512147,
6512241-6512448,6512545-6512600,6512818-6513552
Length = 1671
Score = 29.1 bits (62), Expect = 3.0
Identities = 21/78 (26%), Positives = 35/78 (44%)
Frame = -1
Query: 580 GSYGSHDNGCVLLVHSVYHALDCCPSHSNSVFPDLSREDDPYVEPLVQVVHGVHVFAQHC 401
GS ++D C V + CC S N V P ++++ E L+ +HC
Sbjct: 319 GSGSNNDQECQSEAQVVGKSTGCCDSCGNRVPPKIAKKKKQAGEQLL---------CRHC 369
Query: 400 GRRV*SKAVRGIFQQIFH 347
+ + SK GI ++I+H
Sbjct: 370 DKLLQSKQYCGICKKIWH 387
>05_06_0271 +
26836396-26836610,26836793-26836872,26837573-26837641,
26837694-26837985,26838303-26838399,26838478-26838744,
26838832-26838909,26839019-26839120,26839251-26839300,
26839383-26839482,26839645-26839743,26839840-26839968,
26840319-26840427,26840652-26841055,26841140-26841280,
26841373-26841393
Length = 750
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = -2
Query: 483 RTFPVKMTPMWNPSSRWSTVFMSSLSTVVVASEARRSVGYSSKS 352
R+ P+ +W W TV + SL +V + +R + +SS+S
Sbjct: 568 RSLPITFDGLWTQVITWLTVLIVSLFAMVRSVPSRMAKRFSSQS 611
>07_01_0004 +
35300-35533,35617-35732,39044-39287,39451-40578,
40657-40833
Length = 632
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -3
Query: 461 PLCGTPRPGGPRCSCLRSALWSSRLKQGGPW 369
P CG + G PR SC + A +LK+ G W
Sbjct: 291 PRCGAFKDGVPRMSCAKIA-GRDKLKRRGDW 320
>07_03_1752 -
29218348-29218524,29218593-29218736,29218957-29219148,
29219225-29219440,29219873-29220010,29220137-29220232,
29221204-29221357,29221976-29222098,29222291-29222418,
29222669-29222773,29223396-29223437,29223631-29223746,
29223805-29223916
Length = 580
Score = 27.5 bits (58), Expect = 9.1
Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Frame = -1
Query: 292 DEEALEVCDIVVHGLGCDDGKQNQALVV*NNSSNVTLHVVSNAFRDH-KSHVCQTPKTDH 116
DEE +++ + +GLGC NQ + S LH A D S++CQ+
Sbjct: 424 DEEVVKLANDSKYGLGCAVFSGNQKRAIKIASQ---LHCGVAAINDFASSYMCQSLPFGG 480
Query: 115 ALDFSQTEKFQRIQLLRACRM*I*KYEENW 26
D S +F ++ LRAC + E+ W
Sbjct: 481 VKD-SGFGRFAGVEGLRACCLVKAVVEDRW 509
>07_01_0770 +
5912412-5912476,5913759-5913779,5914015-5914638,
5915264-5915439,5915526-5916124
Length = 494
Score = 27.5 bits (58), Expect = 9.1
Identities = 25/96 (26%), Positives = 33/96 (34%), Gaps = 8/96 (8%)
Frame = -2
Query: 615 STFLSQPLRVSWALTGATTTAVSYWSIASTTL--------WTAVHPTRTVSFRTFPVKMT 460
S F+ P SW L +V YWS + TL W A + P K
Sbjct: 343 SAFMGIPF--SWILLTVIPQSVDYWSAYAVTLFFMGITISWCATSANNPMFAEVVPPKHR 400
Query: 459 PMWNPSSRWSTVFMSSLSTVVVASEARRSVGYSSKS 352
M R +SL+ V + GY SK+
Sbjct: 401 TMIYAFDRAFEGSFASLAAPAVGLVTEKIYGYDSKT 436
>07_01_0766 - 5885207-5885791,5885874-5886224,5886252-5886269,
5886339-5886541,5886632-5886890,5887052-5887264,
5887357-5887482,5887590-5887727,5887817-5888162,
5888254-5888520,5888983-5889172,5889264-5889363,
5889444-5889694,5889990-5890182,5890313-5890336
Length = 1087
Score = 27.5 bits (58), Expect = 9.1
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Frame = -2
Query: 432 STVFMSSLSTVVVASEARRSVGYSSKS--FTKTSRTLAILMSMVYFWM-LMRRPWRSVT* 262
+T+ + +L VV + GY S F K +++ + F LM R R+ T
Sbjct: 990 TTILIINLVGVVAGISYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPT- 1048
Query: 261 SFTVWAVMMANRIRLWWSEITPAT*R 184
VWA+++A+ L W I P T R
Sbjct: 1049 IVVVWAILLASIFSLLWVRIDPFTTR 1074
>03_06_0389 - 33567385-33567969,33568052-33568402,33568646-33568848,
33569044-33569299,33569459-33569671,33569757-33569882,
33569965-33570102,33570191-33570536,33570630-33570896,
33571192-33571378,33571457-33571556,33571659-33571909,
33572242-33572428,33572562-33572573
Length = 1073
Score = 27.5 bits (58), Expect = 9.1
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Frame = -2
Query: 432 STVFMSSLSTVVVASEARRSVGYSSKS--FTKTSRTLAILMSMVYFWM-LMRRPWRSVT* 262
+T+ + +L VV + GY S F K +++ + F LM R R+ T
Sbjct: 976 TTILIINLVGVVAGISYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPT- 1034
Query: 261 SFTVWAVMMANRIRLWWSEITPAT*R 184
VWA+++A+ L W I P T R
Sbjct: 1035 IVVVWAILLASIFSLLWVRIDPFTTR 1060
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,286,670
Number of Sequences: 37544
Number of extensions: 398801
Number of successful extensions: 1250
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1250
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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