Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc18i23
(622 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 26 0.26
AF069739-1|AAC63272.2| 690|Apis mellifera translation initiatio... 26 0.34
AY898652-1|AAX83121.1| 349|Apis mellifera AKH receptor protein. 24 1.0
AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein. 24 1.0
AY569711-1|AAS86664.1| 401|Apis mellifera feminizer protein. 23 3.2
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 22 4.2
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 22 5.5
AY921579-1|AAX14899.1| 996|Apis mellifera ephrin receptor protein. 21 7.3
U15954-1|AAA67442.1| 53|Apis mellifera abaecin precursor protein. 21 9.7
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot... 21 9.7
AY331183-1|AAP94623.1| 953|Apis mellifera NMDA-type glutamate r... 21 9.7
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 21 9.7
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 26.2 bits (55), Expect = 0.26
Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +2
Query: 74 LNSLEFLRLREIECVVRFGSLT-DVAFMVPKGIRYDMKRHVAGVISDHQSLILFAIITAQ 250
+N+ EF L +C+V G L ++ + P +A ++D S+++ ++ITA+
Sbjct: 595 MNAGEFANL---QCIVPTGDLPLNIRWSYPGEEMGGSSGVLAKKVADRVSMLMISVITAR 651
Query: 251 TVNDYV 268
+YV
Sbjct: 652 HAGEYV 657
>AF069739-1|AAC63272.2| 690|Apis mellifera translation initiation
factor 2 protein.
Length = 690
Score = 25.8 bits (54), Expect = 0.34
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = -1
Query: 313 HGLFLDVDEEALEVCDIVVHGLGCDDGKQNQAL 215
H F+ + + DIVV + DDG + Q L
Sbjct: 203 HAAFISMRHRGAHITDIVVLVVAADDGVKEQTL 235
>AY898652-1|AAX83121.1| 349|Apis mellifera AKH receptor protein.
Length = 349
Score = 24.2 bits (50), Expect = 1.0
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = -2
Query: 612 TFLSQPLRVSWALT 571
TFL PL + WA+T
Sbjct: 88 TFLMMPLEIGWAIT 101
>AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein.
Length = 652
Score = 24.2 bits (50), Expect = 1.0
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Frame = -2
Query: 561 TTAVSYWSIASTTLWTAVHPTRTVSFRTFPVKMTPMWNPSSRWSTVFMSSLST-VVVASE 385
T A + + I STTLW H + T P K P + S + +L T + A++
Sbjct: 431 TKASATFGIPSTTLWQRAH---RLGIDT-PKKDGPTKSWSDESLNNALDALRTGTISANK 486
Query: 384 ARRSVGYSSKSFTKTSRTLAILMS 313
A ++ G S + K +R I ++
Sbjct: 487 ASKAFGIPSSTLYKIARREGIRLA 510
>AY569711-1|AAS86664.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 22.6 bits (46), Expect = 3.2
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +1
Query: 550 HSRCRGSRKSPGNSQRLTQEGRC 618
HSR SR GNS R E C
Sbjct: 231 HSRYEDSRHEDGNSYRNDGERSC 253
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 22.2 bits (45), Expect = 4.2
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +2
Query: 83 LEFLRLREIECVVRFGSLTDVAFMV 157
+E+ E CV++FGS T F V
Sbjct: 153 VEYFPFDEQTCVMKFGSWTYDGFQV 177
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 21.8 bits (44), Expect = 5.5
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +2
Query: 83 LEFLRLREIECVVRFGSLTDVAFMV 157
+E+ E CV++FGS T F V
Sbjct: 157 VEYFPFDEQTCVLKFGSWTYDGFKV 181
>AY921579-1|AAX14899.1| 996|Apis mellifera ephrin receptor protein.
Length = 996
Score = 21.4 bits (43), Expect = 7.3
Identities = 6/12 (50%), Positives = 9/12 (75%)
Frame = -1
Query: 526 HALDCCPSHSNS 491
H+ + CP+HS S
Sbjct: 277 HSCEACPAHSKS 288
>U15954-1|AAA67442.1| 53|Apis mellifera abaecin precursor
protein.
Length = 53
Score = 21.0 bits (42), Expect = 9.7
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +2
Query: 23 KPVLFIFSNLHTTCA 67
K V+FIF+ L T CA
Sbjct: 2 KVVIFIFALLATICA 16
>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
protein.
Length = 1010
Score = 21.0 bits (42), Expect = 9.7
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = +2
Query: 311 MDINIASVLEVFVKDLLEYPTDRLASDAT 397
+ + SV +FVKD+L + + +D T
Sbjct: 981 LSLGALSVPNIFVKDVLVFHQGQPTNDIT 1009
>AY331183-1|AAP94623.1| 953|Apis mellifera NMDA-type glutamate
receptor 1 protein.
Length = 953
Score = 21.0 bits (42), Expect = 9.7
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = -3
Query: 137 SNSQNGPRTRFLSNGEIPKNSTTPR 63
SN N P T L+ + +++ TPR
Sbjct: 890 SNGLNDPTTVSLAVDTVARSNVTPR 914
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 21.0 bits (42), Expect = 9.7
Identities = 7/20 (35%), Positives = 13/20 (65%)
Frame = +2
Query: 80 SLEFLRLREIECVVRFGSLT 139
++E+ E C+++FGS T
Sbjct: 161 NVEYFPFDEQSCIMKFGSWT 180
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,412
Number of Sequences: 438
Number of extensions: 3807
Number of successful extensions: 14
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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