Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18i22
         (790 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    28   0.086
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    26   0.35 
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   4.3  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 28.3 bits (60), Expect = 0.086
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +3

Query: 543 SKLNLRNDVICFSKLNWLYEYNSTCKHNQG*CXLFFKTELALRV 674
           + +NL   ++C S L+W   +NST   N     L+++  LAL V
Sbjct: 287 ASVNLICHILCMSDLHWQLPHNSTNPPN---ILLYYRDSLALSV 327


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 26.2 bits (55), Expect = 0.35
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = -3

Query: 506 RRILLVKRVKAMTSFTYGNYSASQTAVRIAGCFAQRMLGKAQIVFV 369
           + ++LVK+VK +    YG+   S T V    C   + L   +I ++
Sbjct: 11  QNVVLVKKVKIVLLIFYGSIMFSMTQVNKEECDYYQNLNLGEIYYI 56


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = -1

Query: 226 SGAPWSSLVGLKCSPADVQPLLVSPYSCT*KPCKPRG 116
           SG   S  +G+K  PA+ + L  S  S    P  P G
Sbjct: 290 SGGIRSDQMGVKIEPAEAESLSTSGSSGILTPVSPYG 326


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,513
Number of Sequences: 438
Number of extensions: 4534
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)