Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18i18
         (695 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024758-2|AAK73905.2|  208|Caenorhabditis elegans Hypothetical ...    31   1.0  
AF192264-1|AAF18435.1|  321|Caenorhabditis elegans CHORD contain...    30   1.8  
AC006708-3|AAF60417.1|  321|Caenorhabditis elegans Chord protein...    30   1.8  
AF016683-7|AAM97999.1|  609|Caenorhabditis elegans Hypothetical ...    29   2.4  
U23511-7|AAC46795.1|  435|Caenorhabditis elegans Hypothetical pr...    28   5.5  
U10401-6|AAA19061.1|  697|Caenorhabditis elegans Hmg protein 4 p...    28   5.5  
Z98877-2|CAB11570.1|  907|Caenorhabditis elegans Hypothetical pr...    28   7.3  
Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical pr...    28   7.3  
Z83123-13|CAB05615.2| 1208|Caenorhabditis elegans Hypothetical p...    28   7.3  
Z83123-2|CAB05606.1| 1014|Caenorhabditis elegans Hypothetical pr...    28   7.3  
Z70680-10|CAA94577.2| 1208|Caenorhabditis elegans Hypothetical p...    28   7.3  
U53151-1|AAB37069.1|  226|Caenorhabditis elegans Clathrin light ...    28   7.3  
AF003739-3|AAB58065.1|  166|Caenorhabditis elegans Human emerin ...    28   7.3  
AC017117-8|AAF16611.1|  138|Caenorhabditis elegans Hypothetical ...    28   7.3  
AC024772-2|AAF60537.2|  756|Caenorhabditis elegans Osm-9 and cap...    27   9.7  

>AC024758-2|AAK73905.2|  208|Caenorhabditis elegans Hypothetical
           protein Y37E11AM.2 protein.
          Length = 208

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 17/58 (29%), Positives = 27/58 (46%)
 Frame = +1

Query: 238 PQVMDARNKIISKKRIQITDARDKLAELAKQRDARLKLEHLKMQRRGQMTPVNVFPKA 411
           P   D   + +SKK   +T   D L E  +  + R      +++R+GQ   V+  PKA
Sbjct: 13  PDEEDTECRKVSKKIASVTLESDSLPESPQTAEERTARRKKRIKRKGQQMDVDPTPKA 70


>AF192264-1|AAF18435.1|  321|Caenorhabditis elegans CHORD containing
           protein protein.
          Length = 321

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = +3

Query: 306 QIGRTCKAEGC*TEARTSQNAKK-RTNDTCKCFSKGHQIYSNCCQQR*SVHRYIQASCLT 482
           QIG  C+  GC TE   S+N +  + +     F +G + +S C ++  +   +++    T
Sbjct: 147 QIGAPCRNNGCSTEFDGSKNKENCQHHPGAAIFHEGMKYWSCCNKKTSNFGAFLEQVGCT 206

Query: 483 ASEH 494
           + EH
Sbjct: 207 SGEH 210


>AC006708-3|AAF60417.1|  321|Caenorhabditis elegans Chord protein
           protein 1 protein.
          Length = 321

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = +3

Query: 306 QIGRTCKAEGC*TEARTSQNAKK-RTNDTCKCFSKGHQIYSNCCQQR*SVHRYIQASCLT 482
           QIG  C+  GC TE   S+N +  + +     F +G + +S C ++  +   +++    T
Sbjct: 147 QIGAPCRNNGCSTEFDGSKNKENCQHHPGAAIFHEGMKYWSCCNKKTSNFGAFLEQVGCT 206

Query: 483 ASEH 494
           + EH
Sbjct: 207 SGEH 210


>AF016683-7|AAM97999.1|  609|Caenorhabditis elegans Hypothetical
           protein K09F6.9 protein.
          Length = 609

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 17/76 (22%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
 Frame = +1

Query: 187 QNKHGKQGVQQGPLKAKPQVMDARNKIISKKRIQITDARDKLAELAKQRDARLKLEHLKM 366
           + K  K+ +++   K +  +   R      +R+Q  +A+DK  E A++ D     E  K 
Sbjct: 374 EEKQKKENLERATQKEREHIERHREAQERHERLQALEAKDKEDERAREEDKAKAREEAKS 433

Query: 367 QR--RGQMTPVNVFPK 408
           ++  + + + V + PK
Sbjct: 434 KKDTKAEKSKVTIDPK 449


>U23511-7|AAC46795.1|  435|Caenorhabditis elegans Hypothetical
           protein C32D5.7 protein.
          Length = 435

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/40 (32%), Positives = 17/40 (42%)
 Frame = +1

Query: 475 VSQPLNTPNLRRQINNKRRFVGNKAVGTQKIHKNPQPQKI 594
           V Q   T  L   I+     +G    GT  +H+NP P  I
Sbjct: 337 VGQRTQTSTLESNISGLEEAMGKATGGTPPVHRNPSPPVI 376


>U10401-6|AAA19061.1|  697|Caenorhabditis elegans Hmg protein 4
           protein.
          Length = 697

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/58 (25%), Positives = 29/58 (50%)
 Frame = +1

Query: 175 RSKRQNKHGKQGVQQGPLKAKPQVMDARNKIISKKRIQITDARDKLAELAKQRDARLK 348
           + KR+ K GK+G +     A  +   A  +     R ++ +  D +A++AK+  A+ K
Sbjct: 536 KEKREKKEGKKGKKDKDPNAPKRATSAYMQWFLASRNELKEDGDSVADVAKKGGAKWK 593


>Z98877-2|CAB11570.1|  907|Caenorhabditis elegans Hypothetical
           protein Y69H2.2 protein.
          Length = 907

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 11/43 (25%), Positives = 17/43 (39%)
 Frame = +3

Query: 294 RCSRQIGRTCKAEGC*TEARTSQNAKKRTNDTCKCFSKGHQIY 422
           +C  +IG  C    C   +    +    T  TC+C  K +  Y
Sbjct: 101 KCDSEIGSACATSQCREGSTCEASDNSTTGYTCRCTDKQYGTY 143


>Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical protein
            W01F3.3 protein.
          Length = 2175

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +1

Query: 544  KAVGTQKIHKNPQPQKILRTVEN 612
            KAV T K HK  +P  I RT+EN
Sbjct: 1152 KAVETVKQHKEQEPNGISRTMEN 1174


>Z83123-13|CAB05615.2| 1208|Caenorhabditis elegans Hypothetical
           protein C25G4.10 protein.
          Length = 1208

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
 Frame = +3

Query: 243 SYGC*K*NNIKEENSDNRCSRQ-IGRTCKAEGC*TEARTSQNAKKRTNDTCKCFSKGHQI 419
           SY C        E   + C  Q +  +C +  C       ++ K+  N   +C S+GH  
Sbjct: 402 SYCCPHDGTHSSEEFTSCCKEQKMPESCMSS-CQYNMTLPESCKENLNTWVQCASEGHD- 459

Query: 420 YSNCCQQR*SVHRYIQASCL 479
           +  CC Q   V +  Q +C+
Sbjct: 460 HLRCCLQE-EVSKPCQTACM 478


>Z83123-2|CAB05606.1| 1014|Caenorhabditis elegans Hypothetical
           protein T04A11.3 protein.
          Length = 1014

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
 Frame = +3

Query: 243 SYGC*K*NNIKEENSDNRCSRQ-IGRTCKAEGC*TEARTSQNAKKRTNDTCKCFSKGHQI 419
           SY C        E   + C  Q +  +C +  C       ++ K+  N   +C S+GH  
Sbjct: 223 SYCCPHDGTHSSEEFTSCCKEQKMPESCMSS-CQYNMTLPESCKENLNTWVQCASEGHD- 280

Query: 420 YSNCCQQR*SVHRYIQASCL 479
           +  CC Q   V +  Q +C+
Sbjct: 281 HLRCCLQE-EVSKPCQTACM 299


>Z70680-10|CAA94577.2| 1208|Caenorhabditis elegans Hypothetical
           protein C25G4.10 protein.
          Length = 1208

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
 Frame = +3

Query: 243 SYGC*K*NNIKEENSDNRCSRQ-IGRTCKAEGC*TEARTSQNAKKRTNDTCKCFSKGHQI 419
           SY C        E   + C  Q +  +C +  C       ++ K+  N   +C S+GH  
Sbjct: 402 SYCCPHDGTHSSEEFTSCCKEQKMPESCMSS-CQYNMTLPESCKENLNTWVQCASEGHD- 459

Query: 420 YSNCCQQR*SVHRYIQASCL 479
           +  CC Q   V +  Q +C+
Sbjct: 460 HLRCCLQE-EVSKPCQTACM 478


>U53151-1|AAB37069.1|  226|Caenorhabditis elegans Clathrin light
           chain protein 1 protein.
          Length = 226

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 13/40 (32%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
 Frame = +1

Query: 241 QVMDARNKIISKKRIQI-TDARDKLAELAKQRDARLKLEH 357
           Q++  +++   KK+I++  +A+ +L E  KQR+  L+L H
Sbjct: 130 QLLSKKDEAEEKKKIELRANAKKELEEWYKQREKTLQLSH 169


>AF003739-3|AAB58065.1|  166|Caenorhabditis elegans Human emerin
           homolog protein 1 protein.
          Length = 166

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 19/55 (34%), Positives = 27/55 (49%)
 Frame = +3

Query: 12  SISK*VCTTPENKLYRTYLFSLEDFSISQTSNINYVVFDRNELRGNHKEKENKHQ 176
           S+   V TT   KLY   L  L D SI+  SN+N   F+ + L  +   K++  Q
Sbjct: 21  SVGPIVATT--RKLYEKKLIKLSDGSINNQSNLNDSQFNEDSLIISSSPKKSPPQ 73


>AC017117-8|AAF16611.1|  138|Caenorhabditis elegans Hypothetical
           protein F43C11.3 protein.
          Length = 138

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 4/89 (4%)
 Frame = +1

Query: 205 QGVQQGPLKAKPQVMDARNKIISKKRIQITDARDKLAELAKQRDARLKLEHLKMQRRG-- 378
           Q +    L  +P+V+  R   +  K  Q     D    +  Q +     E+L  +  G  
Sbjct: 17  QAIPNVVLTGEPRVIARRILNVDMKTAQQLVHPDNQMHVKYQVNVVKNPENLATESSGYI 76

Query: 379 --QMTPVNVFPKATKFTRTVVNKDRVFTD 459
             + TPV ++ +  +  R   N+DRV TD
Sbjct: 77  TEERTPVTIYRRILRPARITFNEDRVVTD 105


>AC024772-2|AAF60537.2|  756|Caenorhabditis elegans Osm-9 and
           capsaicin receptor-relatedprotein 4 protein.
          Length = 756

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = -3

Query: 345 QSSIPLLCKFGQFVSSICYLNSLL*YYFISSIHNLWFSFERSLLNTLLSMFILSF 181
           Q S+  +  +G+ V  +    SLL +     +H+ W ++ R  L   LSMF + F
Sbjct: 344 QKSVLTIAVYGEKVEHL----SLLPHLLEQLVHHKWIAYGRKTLFAQLSMFCIYF 394


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,675,411
Number of Sequences: 27780
Number of extensions: 265854
Number of successful extensions: 702
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)