Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18i08
         (498 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa...    27   2.1  
SPBP22H7.09c |mis15||kinetochore protein Mis15 |Schizosaccharomy...    25   4.8  
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    25   6.3  
SPBC2D10.05 |exg3||glucan 1,3-beta-glucosidase Exg3|Schizosaccha...    25   6.3  

>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 639

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 374 RADVHRADQLSKRTNHSRRLRTTFSHARQ 460
           R   H+ ++  + TNHSRR R   S  R+
Sbjct: 9   RTSTHKFNETDRETNHSRRHRHHHSRHRE 37


>SPBP22H7.09c |mis15||kinetochore protein Mis15 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 409

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -3

Query: 319 DWSPSRFAKKIPKLQSVQSALHQ 251
           +W+P  F K +PK    +S +H+
Sbjct: 59  EWNPEAFYKNVPKSMLKRSIIHR 81


>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 843

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 9/28 (32%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -2

Query: 146 KTPQKLR-GTERHSVNIMTSTGQRFCYL 66
           KTP  +    E+H ++I  ++G ++CY+
Sbjct: 724 KTPMSIHIEREKHQLDISINSGSKWCYV 751


>SPBC2D10.05 |exg3||glucan 1,3-beta-glucosidase
           Exg3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 464

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -2

Query: 89  TGQRFCYLKPVSVIVHNASCTASGRTWSE 3
           TG+ +   K  ++++   SCT S  +WS+
Sbjct: 272 TGEEYGKTKLSNIVIGEWSCTLSQESWSQ 300


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,023,015
Number of Sequences: 5004
Number of extensions: 37052
Number of successful extensions: 97
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)