Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18i08
         (498 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1431 - 33551127-33551300,33551362-33551433,33551508-335515...    29   1.6  
02_02_0081 - 6608901-6609680,6610380-6610808,6610893-6610994,661...    29   2.7  
02_03_0187 - 16166365-16166571,16166665-16166962,16167197-161675...    27   6.3  

>04_04_1431 -
           33551127-33551300,33551362-33551433,33551508-33551597,
           33551671-33551715,33551785-33551880,33552245-33552296,
           33552412-33552500,33552590-33552887,33553007-33553109,
           33553328-33553352,33553503-33553763
          Length = 434

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
 Frame = +1

Query: 196 ACFINKFRQVTKFLM----VHIFGEVRFVRIAVLGFFWQTSKD 312
           AC +  F+ V  +LM    +HI GE+RF     L FF  +S D
Sbjct: 125 ACVLGCFKHVHYYLMTSWTIHIPGEIRFAGTGDLRFFNPSSHD 167


>02_02_0081 -
           6608901-6609680,6610380-6610808,6610893-6610994,
           6611114-6611429,6611624-6611806,6611909-6612030,
           6612181-6612251,6612732-6612921
          Length = 730

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = -2

Query: 188 HNENSRVTIDCLRRKTPQKLRGTERHSVNIMTSTGQRFCYLKP 60
           HN  S+++   L R  PQ     E      MTST   FCY+ P
Sbjct: 560 HNFVSKISDVGLARLVPQSAAAAEATQYR-MTSTAGTFCYIDP 601


>02_03_0187 -
           16166365-16166571,16166665-16166962,16167197-16167524,
           16167990-16168157,16168803-16168858,16168991-16169076,
           16169846-16169977
          Length = 424

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 325 TPDWSPSRFAKKIPKLQSVQSALHQ 251
           TPD+   R+AK IPK +  +  L Q
Sbjct: 66  TPDFEKPRYAKNIPKWEEKEEQLRQ 90


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,179,425
Number of Sequences: 37544
Number of extensions: 235979
Number of successful extensions: 511
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)