Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18i08
         (498 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117199-4|CAN99722.1| 1342|Caenorhabditis elegans Hypothetical ...    30   0.81 
AL117195-32|CAB60770.3| 1342|Caenorhabditis elegans Hypothetical...    30   0.81 
Z30662-10|CAI58651.1|  409|Caenorhabditis elegans Hypothetical p...    28   4.3  
Z30662-9|CAA83138.2|  451|Caenorhabditis elegans Hypothetical pr...    28   4.3  
AC006656-2|AAF39880.1|  326|Caenorhabditis elegans Hypothetical ...    27   5.7  
AL031627-20|CAA20952.1|  325|Caenorhabditis elegans Hypothetical...    27   10.0 

>AL117199-4|CAN99722.1| 1342|Caenorhabditis elegans Hypothetical
           protein Y57A10A.1 protein.
          Length = 1342

 Score = 30.3 bits (65), Expect = 0.81
 Identities = 20/80 (25%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
 Frame = -2

Query: 317 LESFEVCQKNPKTAIRTKRTSPKI*TI--KNLVTCRNLFIKHARAHNENSRVTIDCLRRK 144
           L+  E+  K PK +++ ++ +  +     K++ T     I      +  +R+ +D +  K
Sbjct: 428 LDLQEIPSKTPKKSVKAEKNAQNLAENLQKSVKTVPVTQISSKTTVSARNRLDLDKIPSK 487

Query: 143 TPQKLRGTERHSVNIMTSTG 84
           TPQKL   E++S +   S+G
Sbjct: 488 TPQKLVKVEKNSSDAPNSSG 507


>AL117195-32|CAB60770.3| 1342|Caenorhabditis elegans Hypothetical
           protein Y57A10A.1 protein.
          Length = 1342

 Score = 30.3 bits (65), Expect = 0.81
 Identities = 20/80 (25%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
 Frame = -2

Query: 317 LESFEVCQKNPKTAIRTKRTSPKI*TI--KNLVTCRNLFIKHARAHNENSRVTIDCLRRK 144
           L+  E+  K PK +++ ++ +  +     K++ T     I      +  +R+ +D +  K
Sbjct: 428 LDLQEIPSKTPKKSVKAEKNAQNLAENLQKSVKTVPVTQISSKTTVSARNRLDLDKIPSK 487

Query: 143 TPQKLRGTERHSVNIMTSTG 84
           TPQKL   E++S +   S+G
Sbjct: 488 TPQKLVKVEKNSSDAPNSSG 507


>Z30662-10|CAI58651.1|  409|Caenorhabditis elegans Hypothetical
           protein T16H12.5b protein.
          Length = 409

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 141 GFPTQTVNCHAAVFIVRTRVF 203
           G PTQT + H A+   R+RVF
Sbjct: 234 GSPTQTFHIHKAILAARSRVF 254


>Z30662-9|CAA83138.2|  451|Caenorhabditis elegans Hypothetical
           protein T16H12.5a protein.
          Length = 451

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 141 GFPTQTVNCHAAVFIVRTRVF 203
           G PTQT + H A+   R+RVF
Sbjct: 276 GSPTQTFHIHKAILAARSRVF 296


>AC006656-2|AAF39880.1|  326|Caenorhabditis elegans Hypothetical
           protein H12I13.2 protein.
          Length = 326

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -2

Query: 95  TSTGQRFCYLKPVSVIVHNASCTASG 18
           +S  +  CY K  SV+VH   C  SG
Sbjct: 286 SSATKEKCYFKLTSVMVHRGECAQSG 311


>AL031627-20|CAA20952.1|  325|Caenorhabditis elegans Hypothetical
           protein Y102A5C.32 protein.
          Length = 325

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +1

Query: 163 IVTRLFSLCARACFINKFRQVTKFLMVHIF 252
           I+T   S C   CF  K +++   + VH+F
Sbjct: 100 ILTYYESECLALCFFQKHQKIASVIAVHVF 129


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,442,619
Number of Sequences: 27780
Number of extensions: 217034
Number of successful extensions: 484
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 484
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)