Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18h22
         (313 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.13c |||translation initiation factor eIF3 complex subun...    25   2.0  
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||...    25   2.6  
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce...    25   3.5  
SPBC1347.07 |rex2||RNA exonuclease|Schizosaccharomyces pombe|chr...    25   3.5  
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb...    25   3.5  
SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10 |Schizo...    24   4.6  
SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces po...    24   4.6  
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce...    23   8.1  

>SPAC3A12.13c |||translation initiation factor eIF3 complex
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 274

 Score = 25.4 bits (53), Expect = 2.0
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +2

Query: 59  PCGKSPETRRKAPHRYDGSSDGDAGEDNSRTLSSPSIAQSK 181
           P GK  ++  K   R+D   D D  E+N  +L + S + S+
Sbjct: 21  PLGKDSQSSSKPKKRFDDEEDEDE-EENKESLQNDSHSVSQ 60


>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1260

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
 Frame = +2

Query: 62   CGKSPETRRKAPHRYDGSSDGDAGEDNSRTLSSPSIAQSKVNVEGLR--LKRNGAYSVSE 235
            C    E R +AP+  +G  DG  G +     S+P   +  VN+ G    L   G + V E
Sbjct: 1190 CSILSERRSRAPYGMNGGEDGAMGVNTWIDCSNPDFPR-YVNLGGKNHVLMGKGDHIVIE 1248

Query: 236  T 238
            T
Sbjct: 1249 T 1249


>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1112

 Score = 24.6 bits (51), Expect = 3.5
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = +2

Query: 83   RRKAPHRYDGSSDGDA-GEDNSRTLSSPSIAQSKVNVEGLRLK 208
            RRK       SSD D+  EDN     +P    S +++E L  K
Sbjct: 1053 RRKKMMASKNSSDSDSDSEDNFLASLTPKTNSSSISIENLPRK 1095


>SPBC1347.07 |rex2||RNA exonuclease|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 180

 Score = 24.6 bits (51), Expect = 3.5
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +3

Query: 93  RHIVMMVAAMVTQGRTIPV 149
           +H++M VAA++T G   PV
Sbjct: 22  KHVLMEVAAIITDGNLRPV 40


>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 497

 Score = 24.6 bits (51), Expect = 3.5
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -3

Query: 107 HNDVALSASSPGTFHRVSMSYKNSHVTPKVE 15
           H D  L   SPG F R  +   +S+   KV+
Sbjct: 130 HGDKLLKQLSPGDFERAQLGLGHSYSRAKVK 160


>SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +2

Query: 122 GDAGEDNSRTLSSPSIAQSK-VNVEGLRLKRNGAYSVSETY 241
           G+A +D  R  +SPS+A  K +   G+   +   Y ++E +
Sbjct: 282 GEAAQDPERFTTSPSLAIPKALKHAGIEASQVDYYEINEAF 322


>SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 363

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -3

Query: 146 GNCPPLRHHRCYHHNDVALSASSPG 72
           G+   +  +RCYHH  + L++   G
Sbjct: 155 GSAYKISRNRCYHHGTMLLNSDLEG 179


>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 818

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = +2

Query: 74  PETRRKAPHRYDGSSDGDAGEDNSRTLSSPSIAQS 178
           P T   A    + +   D GEDN  T+ + ++  S
Sbjct: 352 PSTNNNASSYQNFNETSDEGEDNDATIRANNVRSS 386


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,040,007
Number of Sequences: 5004
Number of extensions: 17254
Number of successful extensions: 61
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 81889040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)