Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc18h22
(313 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0560 + 9462996-9463454 30 0.33
01_06_1510 - 37859664-37861319 29 1.0
01_07_0045 - 40706873-40706956,40707083-40707253,40707585-407078... 27 2.3
03_05_0466 - 24602715-24603964,24605762-24605944,24606381-246072... 27 3.1
03_05_0179 - 21583234-21584336,21586274-21586358,21586665-215867... 27 3.1
02_02_0146 - 7171656-7172044,7172383-7175008 27 3.1
06_03_1201 + 28359286-28359452,28360018-28360075,28361060-283611... 27 4.1
04_03_0389 - 15302079-15302120,15302545-15302634,15302718-153029... 27 4.1
01_02_0130 - 11424904-11425142,11425295-11425416,11425461-114255... 27 4.1
08_02_0418 + 16908077-16908156,16908307-16908595,16908686-16908955 26 5.4
06_01_0089 + 715820-716085,716178-717015 26 5.4
05_04_0359 + 20615362-20615549,20615701-20615767,20616126-206161... 26 5.4
05_04_0070 + 17643945-17644002,17644173-17644775,17645376-176455... 26 5.4
04_04_0091 + 22758061-22758342,22758624-22758770 26 5.4
04_04_0020 + 22182649-22182829,22183900-22183999,22184415-221844... 26 5.4
08_02_0776 - 21083181-21083187,21083256-21083683,21083800-210840... 26 7.2
06_03_1159 + 28084786-28085428,28085520-28086166 26 7.2
05_02_0159 - 7186908-7187606 26 7.2
03_06_0607 + 35037467-35038624 26 7.2
01_05_0368 + 21434398-21434415,21434521-21434553,21437074-21437391 26 7.2
01_05_0110 + 18225431-18226992,18227158-18228132,18228343-182284... 26 7.2
10_07_0180 - 13879648-13880064 25 9.5
07_03_0604 + 19903654-19904598 25 9.5
03_01_0080 - 640806-641146,642484-642700,642795-642952,644057-64... 25 9.5
>03_02_0560 + 9462996-9463454
Length = 152
Score = 30.3 bits (65), Expect = 0.33
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = +2
Query: 59 PCGKSPETRRKAPHRYDGSSDGDAGEDNSRTLSSPSIAQSKVNV 190
P GK P+ ++ P S +G AG+ R + S+ K+ +
Sbjct: 26 PAGKKPKAEKRLPASKASSKEGGAGDKKGRKKAKKSVETYKIYI 69
>01_06_1510 - 37859664-37861319
Length = 551
Score = 28.7 bits (61), Expect = 1.0
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +2
Query: 59 PCGKSPETRRKAPHRYDGSSDGDAGEDNSR 148
P PE R P YDG DG G+D+ R
Sbjct: 54 PLQAFPEYDRVTPFDYDGEVDGGDGDDHPR 83
>01_07_0045 -
40706873-40706956,40707083-40707253,40707585-40707812,
40708414-40708423,40709108-40709553
Length = 312
Score = 27.5 bits (58), Expect = 2.3
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -3
Query: 134 PLRHHRCYHHNDVALSASSPGT 69
P HH +HH D LSAS+P +
Sbjct: 75 PFHHHHHHHHRD-VLSASTPSS 95
>03_05_0466 - 24602715-24603964,24605762-24605944,24606381-24607286,
24609446-24609516,24609737-24609846,24610073-24610108,
24610211-24610278,24610655-24610760,24610850-24610997,
24611091-24611218,24611319-24611454,24611924-24612072
Length = 1096
Score = 27.1 bits (57), Expect = 3.1
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +2
Query: 80 TRRKAPHRYDGSSDGDAGEDNSRTLSSPSIAQS 178
TR+KA + DG G +GE R+LSS +A S
Sbjct: 954 TRKKAVYEDDGGGGGGSGE--KRSLSSTFLAAS 984
>03_05_0179 -
21583234-21584336,21586274-21586358,21586665-21586713,
21586801-21586874,21586958-21587050,21587120-21587174,
21587348-21587421,21587702-21587814,21587911-21588168,
21588915-21589012,21589139-21589256,21589754-21589848,
21590001-21590159,21590336-21590525,21590881-21591021,
21591142-21591176,21591659-21591699
Length = 926
Score = 27.1 bits (57), Expect = 3.1
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +2
Query: 77 ETRRKAPHRYDGSSDGDA-GEDNSRTLSSPS 166
E RRK R DG ++G GE SR SP+
Sbjct: 94 EQRRKEMERQDGDAEGSGRGEHRSRGCRSPA 124
>02_02_0146 - 7171656-7172044,7172383-7175008
Length = 1004
Score = 27.1 bits (57), Expect = 3.1
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = -1
Query: 142 IVLPCVTIAATIITMW 95
++LPC+T+A+ IT W
Sbjct: 636 VILPCITLASVAITGW 651
>06_03_1201 +
28359286-28359452,28360018-28360075,28361060-28361152,
28362100-28362421,28362698-28362982,28363431-28363459
Length = 317
Score = 26.6 bits (56), Expect = 4.1
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +2
Query: 65 GKSPETRRKAPHRYDGSSDGDAGEDNSRTLSSPSIAQSKVNVEGLRLKRNGA 220
G+ R APHR +S G GED + P + +G + KR GA
Sbjct: 23 GQGHLPRGGAPHRQRAASRGGGGEDGQQ--GKPYDLCCESTRDGTKSKREGA 72
>04_03_0389 -
15302079-15302120,15302545-15302634,15302718-15302983,
15303196-15303883
Length = 361
Score = 26.6 bits (56), Expect = 4.1
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +2
Query: 65 GKSPETRRKAPHRYDGSS 118
G+ P++RRKAPH G +
Sbjct: 241 GRPPKSRRKAPHEVQGKN 258
>01_02_0130 -
11424904-11425142,11425295-11425416,11425461-11425546,
11425642-11425858,11426788-11426832,11428385-11428593,
11428706-11428936
Length = 382
Score = 26.6 bits (56), Expect = 4.1
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -3
Query: 140 CPPLRHHRCYHHNDVALSASS 78
CPP R H +HH++ A A++
Sbjct: 16 CPPPRRHLLHHHHNQASKAAA 36
>08_02_0418 + 16908077-16908156,16908307-16908595,16908686-16908955
Length = 212
Score = 26.2 bits (55), Expect = 5.4
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +2
Query: 65 GKSPETRRKAPHRYDG 112
G+ P++RRKAPH G
Sbjct: 50 GRPPKSRRKAPHEVQG 65
>06_01_0089 + 715820-716085,716178-717015
Length = 367
Score = 26.2 bits (55), Expect = 5.4
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = -3
Query: 149 YGNCPPLRHHRCYHHNDVALSASSPGT-FHRVS 54
Y N PPL + C A+S+ SP + +R+S
Sbjct: 235 YDNLPPLTNDSCTQQTQPAMSSMSPDSLLNRIS 267
>05_04_0359 +
20615362-20615549,20615701-20615767,20616126-20616191,
20616319-20616348,20616461-20616505,20617020-20617286
Length = 220
Score = 26.2 bits (55), Expect = 5.4
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -3
Query: 113 YHHNDVALSASSPGTFHRVSMSYKN 39
YHH+D +AS P TF RV S+ N
Sbjct: 192 YHHDDRDFAASMPFTF-RVQPSHPN 215
>05_04_0070 +
17643945-17644002,17644173-17644775,17645376-17645579,
17646480-17647009
Length = 464
Score = 26.2 bits (55), Expect = 5.4
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = +3
Query: 51 HTHPVESPRRRGGKRHIVMMVAAMVTQGRTIPVRCHRLAL 170
HTH SP KRH++ + GR + CH+ ++
Sbjct: 128 HTHAFVSP----DKRHLIRSNRKLTLSGRNTLLTCHKASI 163
>04_04_0091 + 22758061-22758342,22758624-22758770
Length = 142
Score = 26.2 bits (55), Expect = 5.4
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +3
Query: 78 RRGGKRHIVMMVAAMVTQGRTIPVRCHRLALLRAKSMLKGFG 203
R G++ +++ AA+ G + +A+L SML GFG
Sbjct: 46 RAVGRQAVMLAGAALFFAGAAVNAAAVNIAMLIVDSMLLGFG 87
>04_04_0020 +
22182649-22182829,22183900-22183999,22184415-22184491,
22184718-22184809,22188655-22189767
Length = 520
Score = 26.2 bits (55), Expect = 5.4
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -3
Query: 137 PPLRHHRCYHHNDVALSASS 78
PP R H YH N++A++A++
Sbjct: 481 PPSRPHYQYHENNIAVAAAA 500
>08_02_0776 -
21083181-21083187,21083256-21083683,21083800-21084048,
21084172-21084248,21084351-21084483
Length = 297
Score = 25.8 bits (54), Expect = 7.2
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Frame = +2
Query: 104 YDGSSDGDAGE---DNSRTLSSPSIAQSKVNVEGLRLKRN 214
YDG SDGDA E D+SR++ + E + +KR+
Sbjct: 118 YDGDSDGDAKEGLRDSSRSMVQMQREVQRKLQEQIEVKRH 157
>06_03_1159 + 28084786-28085428,28085520-28086166
Length = 429
Score = 25.8 bits (54), Expect = 7.2
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +2
Query: 62 CGKSPETRRKAPHRYDGSSDGDAGEDNSRTLSSPSIAQSKVNVEGLRLKRNG 217
C +P + RK+P D +DN+ SP+ A++ V G+R R G
Sbjct: 147 CSTTPVSTRKSPSAMSPLRRADDDDDNAEA-PSPAPARASCEV-GIRCHRCG 196
>05_02_0159 - 7186908-7187606
Length = 232
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +3
Query: 75 RRRGGKRHIVMMVAAMVTQGRT 140
RRRGG M+VAA T G+T
Sbjct: 164 RRRGGPDPAAMVVAAPTTTGKT 185
>03_06_0607 + 35037467-35038624
Length = 385
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +2
Query: 92 APHRYDGSSDGDAGEDNSRTLSSPSIAQSKVNVE 193
A ++DGSSD D G D + P + V +E
Sbjct: 121 ADAKHDGSSDADEGADGDGERAPPRGSYEVVQIE 154
>01_05_0368 + 21434398-21434415,21434521-21434553,21437074-21437391
Length = 122
Score = 25.8 bits (54), Expect = 7.2
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +2
Query: 59 PCGKSPETRRKAPHRYDGSSDG--DAGEDNSRTLSSPSIAQSKVN 187
P SP RRK H Y G G D ++S+ S+PS A S N
Sbjct: 35 PAAFSP--RRKGEHPYRGEIIGFPDVQANSSQPASTPSTAPSTPN 77
>01_05_0110 +
18225431-18226992,18227158-18228132,18228343-18228437,
18228556-18228842
Length = 972
Score = 25.8 bits (54), Expect = 7.2
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 135 RTIPVRCHRLALLRAKSMLKGFGSNEMGLTR 227
R +R ALL KS LKGF +++G R
Sbjct: 24 RGTSLRAQVAALLHWKSTLKGFSQHQLGTWR 54
>10_07_0180 - 13879648-13880064
Length = 138
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +2
Query: 65 GKSPETRRKAPHRYDGSSDGDAGEDNS 145
G + RR R+ G DG AGED S
Sbjct: 84 GATGRLRRWGGVRHGGERDGSAGEDGS 110
>07_03_0604 + 19903654-19904598
Length = 314
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 107 DGSSDGDAGEDNSRTLSSPSI 169
DG +GDA E +S+ S+PSI
Sbjct: 161 DGDGEGDAAEFHSKHGSAPSI 181
>03_01_0080 -
640806-641146,642484-642700,642795-642952,644057-645062
Length = 573
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +3
Query: 84 GGKRHIVMMVAAMVTQGRTIPVRC 155
GG HI +MVA + +G + +RC
Sbjct: 111 GGSDHIYIMVAELSIRGSDVILRC 134
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,282,503
Number of Sequences: 37544
Number of extensions: 137136
Number of successful extensions: 507
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 506
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 388087168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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