Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc18h22
(313 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL450490-2|CAI39489.1| 446|Homo sapiens doublecortex; lissencep... 28 5.0
AL031117-3|CAI43156.1| 446|Homo sapiens doublecortex; lissencep... 28 5.0
AF040254-1|AAC31797.1| 365|Homo sapiens doublecortin isoform pr... 28 5.0
CR457205-1|CAG33486.1| 406|Homo sapiens KLHDC2 protein. 28 6.7
BC024192-1|AAH24192.1| 406|Homo sapiens kelch domain containing... 28 6.7
BC002335-1|AAH02335.1| 406|Homo sapiens kelch domain containing... 28 6.7
AK001771-1|BAA91898.1| 406|Homo sapiens protein ( Homo sapiens ... 28 6.7
AF244137-1|AAF66246.1| 406|Homo sapiens hepatocellular carcinom... 28 6.7
AF113131-1|AAD21038.1| 406|Homo sapiens host cell factor homolo... 28 6.7
BC110989-1|AAI10990.1| 829|Homo sapiens KIF19 protein protein. 27 8.8
BC104852-1|AAI04853.1| 548|Homo sapiens kinesin family member 1... 27 8.8
BC093631-1|AAH93631.1| 548|Homo sapiens kinesin family member 1... 27 8.8
AK094619-1|BAC04386.1| 548|Homo sapiens protein ( Homo sapiens ... 27 8.8
AB209654-1|BAD92891.1| 127|Homo sapiens GLI-Kruppel family memb... 27 8.8
>AL450490-2|CAI39489.1| 446|Homo sapiens doublecortex;
lissencephaly, X-linked (doublecortin) protein.
Length = 446
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +2
Query: 68 KSPETRRKAPHRYDGSSDGDAGEDNSRTLSSPSIAQSKVN 187
KSP R++ D +D DA +S LS+P QS ++
Sbjct: 377 KSPGPMRRSKSPADSGNDQDANGTSSSQLSTPKSKQSPIS 416
>AL031117-3|CAI43156.1| 446|Homo sapiens doublecortex;
lissencephaly, X-linked (doublecortin) protein.
Length = 446
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +2
Query: 68 KSPETRRKAPHRYDGSSDGDAGEDNSRTLSSPSIAQSKVN 187
KSP R++ D +D DA +S LS+P QS ++
Sbjct: 377 KSPGPMRRSKSPADSGNDQDANGTSSSQLSTPKSKQSPIS 416
>AF040254-1|AAC31797.1| 365|Homo sapiens doublecortin isoform
protein.
Length = 365
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +2
Query: 68 KSPETRRKAPHRYDGSSDGDAGEDNSRTLSSPSIAQSKVN 187
KSP R++ D +D DA +S LS+P QS ++
Sbjct: 296 KSPGPMRRSKSPADSGNDQDANGTSSSQLSTPKSKQSPIS 335
>CR457205-1|CAG33486.1| 406|Homo sapiens KLHDC2 protein.
Length = 406
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = -3
Query: 194 LQH*LCSEQC*AMTTYGNCPP--LRHHRCYHHNDVALSASSPGTFHRVSM 51
L H C+ + +G C L HHR H N++ + + P + R+S+
Sbjct: 320 LWHTACASDEGEVIVFGGCANNLLVHHRAAHSNEILIFSVQPKSLVRLSL 369
>BC024192-1|AAH24192.1| 406|Homo sapiens kelch domain containing 2
protein.
Length = 406
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = -3
Query: 194 LQH*LCSEQC*AMTTYGNCPP--LRHHRCYHHNDVALSASSPGTFHRVSM 51
L H C+ + +G C L HHR H N++ + + P + R+S+
Sbjct: 320 LWHTACASDEGEVIVFGGCANNLLVHHRAAHSNEILIFSVQPKSLVRLSL 369
>BC002335-1|AAH02335.1| 406|Homo sapiens kelch domain containing 2
protein.
Length = 406
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = -3
Query: 194 LQH*LCSEQC*AMTTYGNCPP--LRHHRCYHHNDVALSASSPGTFHRVSM 51
L H C+ + +G C L HHR H N++ + + P + R+S+
Sbjct: 320 LWHTACASDEGEVIVFGGCANNLLVHHRAAHSNEILIFSVQPKSLVRLSL 369
>AK001771-1|BAA91898.1| 406|Homo sapiens protein ( Homo sapiens
cDNA FLJ10909 fis, clone OVARC1000091, weakly similar to
HOST CELL FACTOR C1. ).
Length = 406
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = -3
Query: 194 LQH*LCSEQC*AMTTYGNCPP--LRHHRCYHHNDVALSASSPGTFHRVSM 51
L H C+ + +G C L HHR H N++ + + P + R+S+
Sbjct: 320 LWHTACASDEGEVIVFGGCANNLLVHHRAAHSNEILIFSVQPKSLVRLSL 369
>AF244137-1|AAF66246.1| 406|Homo sapiens hepatocellular
carcinoma-associated antigen 33 protein.
Length = 406
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = -3
Query: 194 LQH*LCSEQC*AMTTYGNCPP--LRHHRCYHHNDVALSASSPGTFHRVSM 51
L H C+ + +G C L HHR H N++ + + P + R+S+
Sbjct: 320 LWHTACASDEGEVIVFGGCANNLLVHHRAAHSNEILIFSVQPKSLVRLSL 369
>AF113131-1|AAD21038.1| 406|Homo sapiens host cell factor homolog
LCP protein.
Length = 406
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = -3
Query: 194 LQH*LCSEQC*AMTTYGNCPP--LRHHRCYHHNDVALSASSPGTFHRVSM 51
L H C+ + +G C L HHR H N++ + + P + R+S+
Sbjct: 320 LWHTACASDEGEVIVFGGCANNLLVHHRAAHSNEILIFSVQPKSLVRLSL 369
>BC110989-1|AAI10990.1| 829|Homo sapiens KIF19 protein protein.
Length = 829
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/41 (26%), Positives = 20/41 (48%)
Frame = +2
Query: 77 ETRRKAPHRYDGSSDGDAGEDNSRTLSSPSIAQSKVNVEGL 199
E R++ + D D D G+D L P +A ++ ++ L
Sbjct: 478 EQRKECYAKDDSEKDSDTGDDQPDILEPPEVAAARESIAAL 518
>BC104852-1|AAI04853.1| 548|Homo sapiens kinesin family member 19
protein.
Length = 548
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/41 (26%), Positives = 20/41 (48%)
Frame = +2
Query: 77 ETRRKAPHRYDGSSDGDAGEDNSRTLSSPSIAQSKVNVEGL 199
E R++ + D D D G+D L P +A ++ ++ L
Sbjct: 478 EQRKECYAKDDSEKDSDTGDDQPDILEPPEVAAARESIAAL 518
>BC093631-1|AAH93631.1| 548|Homo sapiens kinesin family member 19
protein.
Length = 548
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/41 (26%), Positives = 20/41 (48%)
Frame = +2
Query: 77 ETRRKAPHRYDGSSDGDAGEDNSRTLSSPSIAQSKVNVEGL 199
E R++ + D D D G+D L P +A ++ ++ L
Sbjct: 478 EQRKECYAKDDSEKDSDTGDDQPDILEPPEVAAARESIAAL 518
>AK094619-1|BAC04386.1| 548|Homo sapiens protein ( Homo sapiens
cDNA FLJ37300 fis, clone BRAMY2015782, moderately
similar to KINESIN-LIKE PROTEIN. ).
Length = 548
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/41 (26%), Positives = 20/41 (48%)
Frame = +2
Query: 77 ETRRKAPHRYDGSSDGDAGEDNSRTLSSPSIAQSKVNVEGL 199
E R++ + D D D G+D L P +A ++ ++ L
Sbjct: 478 EQRKECYAKDDSEKDSDTGDDQPDILEPPEVAAARESIAAL 518
>AB209654-1|BAD92891.1| 127|Homo sapiens GLI-Kruppel family member
GLI4 variant protein.
Length = 127
Score = 27.5 bits (58), Expect = 8.8
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = -3
Query: 140 CPPLRHHRCYHH 105
CPPL H +C+HH
Sbjct: 19 CPPLWHPQCWHH 30
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,983,150
Number of Sequences: 237096
Number of extensions: 705237
Number of successful extensions: 1939
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1930
length of database: 76,859,062
effective HSP length: 78
effective length of database: 58,365,574
effective search space used: 1459139350
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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