Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18h22
         (313 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81101-7|CAB03200.1|  613|Caenorhabditis elegans Hypothetical pr...    31   0.13 
Z70752-6|CAA94759.1|  613|Caenorhabditis elegans Hypothetical pr...    31   0.13 
AC025721-7|AAK29911.3|  668|Caenorhabditis elegans Half transpor...    27   2.8  
U80438-5|AAB37636.1| 1217|Caenorhabditis elegans Nuclear pore co...    26   6.4  
Z54236-7|CAA90982.1| 1471|Caenorhabditis elegans Hypothetical pr...    25   8.4  
Z49913-2|CAA90143.1|  660|Caenorhabditis elegans Hypothetical pr...    25   8.4  

>Z81101-7|CAB03200.1|  613|Caenorhabditis elegans Hypothetical
           protein F25B3.6 protein.
          Length = 613

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = +2

Query: 77  ETRRKAPHRYDGSSDGDAGEDNSRTLSSPSIA 172
           ET+R+AP   D  SD DAG    + LS+ S A
Sbjct: 12  ETKRRAPATSDSDSDSDAGPKPGKPLSTDSSA 43


>Z70752-6|CAA94759.1|  613|Caenorhabditis elegans Hypothetical
           protein F25B3.6 protein.
          Length = 613

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = +2

Query: 77  ETRRKAPHRYDGSSDGDAGEDNSRTLSSPSIA 172
           ET+R+AP   D  SD DAG    + LS+ S A
Sbjct: 12  ETKRRAPATSDSDSDSDAGPKPGKPLSTDSSA 43


>AC025721-7|AAK29911.3|  668|Caenorhabditis elegans Half transporter
           (pgp related)protein 6 protein.
          Length = 668

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 96  HIVMMVAAMVTQGRTIPVRCHRLALLRAKSML 191
           H+V      V +GRT+ +  HRL+ +R+  M+
Sbjct: 601 HMVQEALNNVMKGRTVLIIAHRLSTIRSAQMI 632


>U80438-5|AAB37636.1| 1217|Caenorhabditis elegans Nuclear pore
           complex protein protein7 protein.
          Length = 1217

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 107 DGSSDGDAGEDNSRTLSSPSIAQSKVNV 190
           DG    D G  NS + SSPS + +  N+
Sbjct: 27  DGDKSNDEGTSNSSSKSSPSASPALKNI 54


>Z54236-7|CAA90982.1| 1471|Caenorhabditis elegans Hypothetical
           protein C27B7.7 protein.
          Length = 1471

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = -3

Query: 77  PGTFHRVSMSYKNSHVT-PKVELV 9
           P TF+RV +S KNSH   P  E+V
Sbjct: 721 PKTFYRVRISGKNSHADGPASEVV 744


>Z49913-2|CAA90143.1|  660|Caenorhabditis elegans Hypothetical
           protein ZK938.3 protein.
          Length = 660

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 16/62 (25%), Positives = 28/62 (45%)
 Frame = +3

Query: 45  VTHTHPVESPRRRGGKRHIVMMVAAMVTQGRTIPVRCHRLALLRAKSMLKGFGSNEMGLT 224
           VTH H +       GKR I  +V  +  Q + + V   R+ +++     KG+   ++ L 
Sbjct: 498 VTHVH-ISKNVVNMGKRKIYTVVKKLAKQEKRLLVSIDRIDVMKKDPKHKGYTHRQILLR 556

Query: 225 RF 230
            F
Sbjct: 557 NF 558


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,865,627
Number of Sequences: 27780
Number of extensions: 105110
Number of successful extensions: 275
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 271
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 275
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 344570176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)