Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc18h22
(313 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 23 1.1
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 23 1.1
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 23 1.1
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 23 1.1
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 23 1.1
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 23 1.1
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 23 1.1
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 23 1.1
AB207270-1|BAE72137.1| 429|Apis mellifera broad-complex protein. 23 1.1
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein. 23 1.1
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 22 1.5
AF069739-1|AAC63272.2| 690|Apis mellifera translation initiatio... 21 2.6
AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein. 21 4.6
AJ849455-1|CAH60991.1| 366|Apis mellifera twist protein protein. 20 6.0
AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter... 20 8.0
AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter... 20 8.0
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 22.6 bits (46), Expect = 1.1
Identities = 13/58 (22%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Frame = -1
Query: 241 VGFRNRVSPISFE--PKPF-NIDFALSNARR*QRT--GIVLPCVTIAATIITMWRFPP 83
+G + + I+++ P+P+ ++ F + RR +++PCV I++ + + PP
Sbjct: 163 IGMPGKKNTITYQCCPEPYVDVTFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPP 220
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 22.6 bits (46), Expect = 1.1
Identities = 13/58 (22%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Frame = -1
Query: 241 VGFRNRVSPISFE--PKPF-NIDFALSNARR*QRT--GIVLPCVTIAATIITMWRFPP 83
+G + + I+++ P+P+ ++ F + RR +++PCV I++ + + PP
Sbjct: 163 IGMPGKKNTITYQCCPEPYVDVTFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPP 220
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 22.6 bits (46), Expect = 1.1
Identities = 13/58 (22%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Frame = -1
Query: 241 VGFRNRVSPISFE--PKPF-NIDFALSNARR*QRT--GIVLPCVTIAATIITMWRFPP 83
+G + + I+++ P+P+ ++ F + RR +++PCV I++ + + PP
Sbjct: 163 IGMPGKKNTITYQCCPEPYVDVTFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPP 220
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 22.6 bits (46), Expect = 1.1
Identities = 13/58 (22%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Frame = -1
Query: 241 VGFRNRVSPISFE--PKPF-NIDFALSNARR*QRT--GIVLPCVTIAATIITMWRFPP 83
+G + + I+++ P+P+ ++ F + RR +++PCV I++ + + PP
Sbjct: 163 IGMPGKKNTITYQCCPEPYVDVTFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPP 220
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 22.6 bits (46), Expect = 1.1
Identities = 13/58 (22%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Frame = -1
Query: 241 VGFRNRVSPISFE--PKPF-NIDFALSNARR*QRT--GIVLPCVTIAATIITMWRFPP 83
+G + + I+++ P+P+ ++ F + RR +++PCV I++ + + PP
Sbjct: 163 IGMPGKKNTITYQCCPEPYVDVTFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPP 220
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 22.6 bits (46), Expect = 1.1
Identities = 13/58 (22%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Frame = -1
Query: 241 VGFRNRVSPISFE--PKPF-NIDFALSNARR*QRT--GIVLPCVTIAATIITMWRFPP 83
+G + + I+++ P+P+ ++ F + RR +++PCV I++ + + PP
Sbjct: 163 IGMPGKKNTITYQCCPEPYVDVTFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPP 220
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.6 bits (46), Expect = 1.1
Identities = 13/58 (22%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Frame = -1
Query: 241 VGFRNRVSPISFE--PKPF-NIDFALSNARR*QRT--GIVLPCVTIAATIITMWRFPP 83
+G + + I+++ P+P+ ++ F + RR +++PCV I++ + + PP
Sbjct: 231 IGMPGKKNTITYQCCPEPYVDVTFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPP 288
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.6 bits (46), Expect = 1.1
Identities = 13/58 (22%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Frame = -1
Query: 241 VGFRNRVSPISFE--PKPF-NIDFALSNARR*QRT--GIVLPCVTIAATIITMWRFPP 83
+G + + I+++ P+P+ ++ F + RR +++PCV I++ + + PP
Sbjct: 231 IGMPGKKNTITYQCCPEPYVDVTFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPP 288
>AB207270-1|BAE72137.1| 429|Apis mellifera broad-complex protein.
Length = 429
Score = 22.6 bits (46), Expect = 1.1
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -3
Query: 56 SMSYKNSHVTPKVE 15
SM KN+HV+ KVE
Sbjct: 212 SMGVKNNHVSSKVE 225
>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
Length = 1598
Score = 22.6 bits (46), Expect = 1.1
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 95 ALSASSPGTFHRVSMSYKNSHVTPKVELVG 6
A +ASSPG R S ++ + +P LVG
Sbjct: 912 ATAASSPGLLERASPAFSGTS-SPTNSLVG 940
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 22.2 bits (45), Expect = 1.5
Identities = 7/20 (35%), Positives = 13/20 (65%)
Frame = -1
Query: 142 IVLPCVTIAATIITMWRFPP 83
+++PCV IA+ + + PP
Sbjct: 238 LIVPCVLIASMAVLGFTLPP 257
>AF069739-1|AAC63272.2| 690|Apis mellifera translation initiation
factor 2 protein.
Length = 690
Score = 21.4 bits (43), Expect = 2.6
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -3
Query: 80 SPGTFHRVSMSYKNSHVTPKVELV 9
+PG +SM ++ +H+T V LV
Sbjct: 200 TPGHAAFISMRHRGAHITDIVVLV 223
>AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein.
Length = 652
Score = 20.6 bits (41), Expect = 4.6
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = +3
Query: 6 SNQFNFRGHMGVLVTHTHPVES 71
S + N RGH G +H H +S
Sbjct: 389 SGENNSRGHSGQSSSHHHGSKS 410
>AJ849455-1|CAH60991.1| 366|Apis mellifera twist protein protein.
Length = 366
Score = 20.2 bits (40), Expect = 6.0
Identities = 6/12 (50%), Positives = 8/12 (66%)
Frame = -3
Query: 134 PLRHHRCYHHND 99
P + H+ YHH D
Sbjct: 157 PRQSHQSYHHMD 168
>AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 593
Score = 19.8 bits (39), Expect = 8.0
Identities = 7/18 (38%), Positives = 11/18 (61%)
Frame = -1
Query: 139 VLPCVTIAATIITMWRFP 86
+L V +A + +WRFP
Sbjct: 29 ILSVVGLAIGLGNLWRFP 46
>AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 646
Score = 19.8 bits (39), Expect = 8.0
Identities = 7/18 (38%), Positives = 11/18 (61%)
Frame = -1
Query: 139 VLPCVTIAATIITMWRFP 86
+L V +A + +WRFP
Sbjct: 82 ILSVVGLAIGLGNLWRFP 99
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,000
Number of Sequences: 438
Number of extensions: 1269
Number of successful extensions: 17
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used: 6595479
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)
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