Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18h21
         (574 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    42   6e-05
SPBC428.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   1.5  
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ...    27   1.5  
SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit C...    26   3.4  
SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces ...    25   7.9  

>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
           transporting Cta4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1211

 Score = 41.9 bits (94), Expect = 6e-05
 Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 1/97 (1%)
 Frame = +1

Query: 277 QLFKPVPTVLQGTVLPF-LFIYPLVFYSWIVVYGIEDNFEAGFVTVAVIATVQILICLCC 453
           QL+  +PT     V PF LF+YP + Y +      E   E  ++T   + T+  L  L  
Sbjct: 16  QLYIKLPTFFHLYVWPFALFVYPYIGYVYQNKLYSE---EVRYLTYIAVGTIHALFWLAG 72

Query: 454 YWSVHINCFLSCSAVKDPIQAEVVKVVPTSNNGSSEL 564
            W+  + C ++C       QA  + V P+    SS +
Sbjct: 73  EWNTKVYCLMTCRKTDKVEQATHILVTPSKIGESSSV 109


>SPBC428.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 115

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 14/56 (25%), Positives = 29/56 (51%)
 Frame = +1

Query: 313 TVLPFLFIYPLVFYSWIVVYGIEDNFEAGFVTVAVIATVQILICLCCYWSVHINCF 480
           + +  L +  ++++S ++V        A F T+AVI+   ++ CL  YW ++   F
Sbjct: 60  SAINILTLIIVLYFSLVIVNKTTSIALALFKTLAVISFFLLIGCLFAYWFINNGSF 115


>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1026

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 4/101 (3%)
 Frame = +1

Query: 160  YHLVKIWQLR*NPYQLIEF-FIATSMVKMQSSLDDLVQYTQLFKPVPTVLQGTVLPFLFI 336
            Y L  I  LR + + + +  F+++ +++   S+D  +   +L     +V    + P  FI
Sbjct: 736  YILSLIVSLRPSAFDVSQLKFLSSYLLQKSESMDYDLTAIRLLSNGFSVFSKHIDPAKFI 795

Query: 337  YPLVFYSWIVVYGIEDN---FEAGFVTVAVIATVQILICLC 450
            Y LV  S      ++D         V V+V   V +L CLC
Sbjct: 796  YNLVLSSLENTKDLDDKNSILYRSIVDVSVSNAVLLLTCLC 836


>SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit
           Cwp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 10/35 (28%), Positives = 22/35 (62%)
 Frame = +2

Query: 2   LSGFTLRSFSMHFTHYFCNLQHVNNLSSWLDSEIK 106
           L+GF + +   H+T +    Q +N+  S++D+E++
Sbjct: 64  LTGFLIMNNPAHYTVWAYRFQILNHTPSYIDNELE 98


>SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 501

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = +1

Query: 325 FLFIYPLVFYSWIVVYGIEDNFEAGFVTVAVIATVQILICLCCY 456
           FL++ P  F   + VY    NF   F+ +  + +  I I L  +
Sbjct: 192 FLYVAPAYFVYLLRVYCFTPNFRPQFLNILKLGSTVISIFLLAF 235


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,296,562
Number of Sequences: 5004
Number of extensions: 44983
Number of successful extensions: 141
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)