Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18h21
         (574 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0233 - 16061182-16061714,16062765-16063578                       29   2.0  
11_06_0271 - 21804629-21805836,21805997-21806015                       28   4.6  
06_01_0747 - 5587261-5587356,5587472-5587855,5588133-5588192,558...    28   4.6  
05_04_0256 - 19465636-19466709,19467649-19467765,19468168-194682...    28   4.6  

>10_08_0233 - 16061182-16061714,16062765-16063578
          Length = 448

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -1

Query: 328 EKAKPCLVKQSEQA*KAVYTELNHLVTTASLPSMS 224
           + A PCLV  S       Y   +H++  ASLPS++
Sbjct: 11  QSASPCLVPHSHHQPPCHYRATSHVIGKASLPSVA 45


>11_06_0271 - 21804629-21805836,21805997-21806015
          Length = 408

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 20  RSFSMHFTHYFCNLQHVNNLSSWLD 94
           R  ++HF  YFC    + N S W+D
Sbjct: 136 RPCALHFFDYFCKTLPIVNTSGWVD 160


>06_01_0747 - 5587261-5587356,5587472-5587855,5588133-5588192,
            5588428-5588484,5588663-5588800,5588901-5588966,
            5589234-5589452,5589522-5589737,5589813-5589884,
            5589952-5590205,5590356-5590525,5590840-5591029,
            5592211-5592331,5592838-5592921,5593003-5593365,
            5594530-5594724,5594938-5595933,5596329-5596370
          Length = 1240

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 10/37 (27%), Positives = 22/37 (59%)
 Frame = +1

Query: 430  QILICLCCYWSVHINCFLSCSAVKDPIQAEVVKVVPT 540
            +I +C  C  +VH++C+ S +    P + E+ + +P+
Sbjct: 893  RIFVCSSCKAAVHLDCYRSVTNPTGPWKCELCQEMPS 929


>05_04_0256 -
           19465636-19466709,19467649-19467765,19468168-19468279,
           19469019-19469167,19469378-19469449,19469544-19469609,
           19471945-19472073,19474539-19474647,19475225-19475304,
           19475408-19475533,19475607-19475657,19475738-19475920,
           19476019-19476105,19476184-19476294,19476692-19476796,
           19477513-19477678,19477769-19477941,19478022-19478094,
           19479472-19479655,19479759-19480203
          Length = 1203

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 17/60 (28%), Positives = 26/60 (43%)
 Frame = +1

Query: 322 PFLFIYPLVFYSWIVVYGIEDNFEAGFVTVAVIATVQILICLCCYWSVHINCFLSCSAVK 501
           PFL +Y L    W+VV     +F    V +  ++   +L  L   WSV    F+  S  +
Sbjct: 30  PFLALYAL----WLVVVVPALDFTDALVVLGALSASHVLAFLFTAWSVDFRAFVGYSKAR 85


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,847,975
Number of Sequences: 37544
Number of extensions: 253509
Number of successful extensions: 498
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)