Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18h20
         (533 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1393.09c |||RWD domain|Schizosaccharomyces pombe|chr 3|||Manual    44   1e-05
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    43   3e-05
SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr 1||...    28   0.76 
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    27   1.3  
SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subuni...    27   2.3  
SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces po...    26   4.1  
SPCC126.14 |prp18||U5 snRNP-associated protein Prp18|Schizosacch...    25   5.4  
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1...    25   5.4  
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch...    25   7.1  
SPBC1539.01c |||mitochondrial ribosomal protein subunit L15|Schi...    25   9.4  

>SPCC1393.09c |||RWD domain|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 215

 Score = 44.4 bits (100), Expect = 1e-05
 Identities = 35/134 (26%), Positives = 61/134 (45%), Gaps = 2/134 (1%)
 Frame = +3

Query: 138 EVEALDSIYFGDMTVIETKPFHKFSIPIKSEGFDDGEGLACHLVFTYTSKYPDELPIIEI 317
           E E L+SIY  +   I    F + + PI  E  +     +       +  YPDE+P ++I
Sbjct: 8   EREILESIYPEEFKCINDSTF-EITQPIDREESNCDNPPSLIFTCQLSEAYPDEVPDVKI 66

Query: 318 DNEENFDNIVDKE--ELLTHLAEQGKENLGMVMVFTLVSAGQEWLNETWDKVKKEREERI 491
              E    + ++E   L   +A+  +E LGM M+F+L S  +E  N    +  +   + I
Sbjct: 67  TFSEPHPWLGEEEIERLKQVVAQNAEECLGMAMIFSLCSVAKEETNAILIEQSQRETQAI 126

Query: 492 LAKQKADEEAELKR 533
             + + + E E K+
Sbjct: 127 EERHRKEAEQENKK 140


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 42.7 bits (96), Expect = 3e-05
 Identities = 38/143 (26%), Positives = 63/143 (44%), Gaps = 10/143 (6%)
 Frame = +3

Query: 129 QTSEVEALDSIYFGDMTVIETKPF------HKFSIPIKSEGFDDGEGLACHLVFTYTSKY 290
           Q +E+EAL +I+  D   ++ +        H + I + S   +        L       Y
Sbjct: 14  QENEIEALKAIFMDDFEELKVRNAWNVTNGHVYCIHLCSRSANSKSIAKLDLCIELGRSY 73

Query: 291 PDELPIIEIDNEENFDNIVDKEELLTHLAEQGKENLGMVMVFTLVSAGQEWLNETWDKVK 470
           P   P+I++ N EN  N   +  LL  L  + K+ LG  M+F L S  Q++LN+    + 
Sbjct: 74  PYVKPVIKLQNGENVLNSQIRF-LLDKLDTKAKDLLGEEMIFELASIVQDYLNDWQSDLS 132

Query: 471 KE----REERILAKQKADEEAEL 527
            +     EER +  +   E AE+
Sbjct: 133 SQFASLEEERAVQLKHDRERAEV 155


>SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 469

 Score = 28.3 bits (60), Expect = 0.76
 Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 8/83 (9%)
 Frame = +3

Query: 306 IIEIDNEENFDNIVDKEELL-THLAEQGKENLGMVMVF---TLVSAGQEWLNETWDKVK- 470
           ++E+DNEE+ D    +E L+ THL E  ++   +   +    L+S+G    +  + +V  
Sbjct: 323 VVEVDNEEHSDFPKLREMLIRTHLEELKEQTNKLYEAYRTERLLSSGISQDHSVFREVNP 382

Query: 471 --KEREERILAKQKADE-EAELK 530
             K  EER L ++K  + EAE+K
Sbjct: 383 SAKLEEERALHEEKLMKMEAEMK 405


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 12/24 (50%), Positives = 20/24 (83%), Gaps = 1/24 (4%)
 Frame = +3

Query: 459 DKVKKEREERI-LAKQKADEEAEL 527
           +K KKEREE++ L ++ AD++AE+
Sbjct: 407 EKKKKEREEQVRLLQESADKDAEM 430


>SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subunit
           Orc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 707

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = +1

Query: 367 HILLNRVKKTWEWSWYSH*CQLDKSGLMRLGIKLRKSVKK 486
           H+ +N+  +  +WS+Y+H  +  +  L+ +   LR + KK
Sbjct: 183 HLKVNKYTEPLDWSYYAHNLERIEDLLVEMEENLRPTKKK 222


>SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 674

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -3

Query: 531 FSVLPLHLPFVWLVSFLHALS 469
           FS + + LPF+ L+SFLH  S
Sbjct: 147 FSPIIITLPFIALISFLHLRS 167


>SPCC126.14 |prp18||U5 snRNP-associated protein
           Prp18|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 343

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 12/23 (52%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
 Frame = +3

Query: 468 KKEREERILA-KQKADEEAELKR 533
           +KERE++ L  KQ+ DE+ ELK+
Sbjct: 33  EKEREKKYLQEKQQKDEQRELKK 55


>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1004

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +1

Query: 319 TMRRISTILLIKRNFSHILLNRVKKTWEW 405
           T+  ++ ++LI  N SH+     K  W W
Sbjct: 846 TLANLAPMMLITHNASHVPPRPSKSLWNW 874


>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1316

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 141 VEALDSIY-FGDMTVIETKPFHKFSIPIKSEGFDDGE 248
           V A++++Y  G     E+ PF K ++P++   F + E
Sbjct: 497 VSAVNTLYGVGSSYTSESFPFSKLTVPVERNSFRETE 533


>SPBC1539.01c |||mitochondrial ribosomal protein subunit
           L15|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 210

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
 Frame = +3

Query: 117 YNYEQTSEVEALDSIY---FGDMTVIETKPFHKFSIPIKS 227
           Y YE TS  E +DS +   FG+   I  K   +  +  KS
Sbjct: 40  YRYEMTSTEEDIDSFFSRVFGEKNYISDKSLREQIVTHKS 79


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,127,732
Number of Sequences: 5004
Number of extensions: 43630
Number of successful extensions: 119
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)