Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18h11
         (578 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   3.8  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   5.0  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   5.0  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   8.8  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   8.8  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          21   8.8  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   8.8  

>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/20 (45%), Positives = 11/20 (55%), Gaps = 1/20 (5%)
 Frame = +1

Query: 484 PLNN-WKPDTLYLNLYQPVY 540
           P N  W+PDT+  N   P Y
Sbjct: 83  PYNRVWRPDTILYNNADPQY 102


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 8/31 (25%), Positives = 18/31 (58%)
 Frame = -1

Query: 491 FKGSSIPLLSPNTELRSFEPAPQSVCGTTLC 399
           +KG ++ ++S  T+ + + P P ++ G   C
Sbjct: 92  YKGRALVVVSCVTKDQPYRPHPHNLVGKEAC 122


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 8/31 (25%), Positives = 18/31 (58%)
 Frame = -1

Query: 491 FKGSSIPLLSPNTELRSFEPAPQSVCGTTLC 399
           +KG ++ ++S  T+ + + P P ++ G   C
Sbjct: 92  YKGRALVVVSCVTKDQPYRPHPHNLVGKEAC 122


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +1

Query: 490 NNWKPDTLYLNLYQPVYRM 546
           N W PDT ++N  Q  + +
Sbjct: 92  NIWVPDTFFVNEKQSYFHI 110


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +1

Query: 490 NNWKPDTLYLNLYQPVYRM 546
           N W PDT ++N  Q  + +
Sbjct: 92  NIWVPDTFFVNEKQSYFHI 110


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 352 IPYTVETCIALWQRPPRILNRELD 281
           +P+ VE  I+   +PPR L    D
Sbjct: 45  LPFGVENTISSVPQPPRSLEGSYD 68


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +1

Query: 490 NNWKPDTLYLNLYQPVYRM 546
           N W PDT ++N  Q  + +
Sbjct: 31  NIWVPDTFFVNEKQSYFHI 49


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,134
Number of Sequences: 438
Number of extensions: 3720
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16748661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)